DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shd and sad

DIOPT Version :9

Sequence 1:NP_001261843.1 Gene:shd / 39592 FlyBaseID:FBgn0003388 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_650123.1 Gene:sad / 44858 FlyBaseID:FBgn0003312 Length:520 Species:Drosophila melanogaster


Alignment Length:543 Identity:127/543 - (23%)
Similarity:215/543 - (39%) Gaps:64/543 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 RHKLADIYLRPLLKNTL---------LEDFYHAELIQPEAPKRRRRGIWDIPGPKRIPFLGTKWI 76
            ||.|..:.:| :|..:|         |:.|...||....|.|     ...||..|.:|.:||   
  Fly    15 RHLLDQLLVR-ILSLSLFRSRCDPPPLQRFPATELPPAVAAK-----YVPIPRVKGLPVVGT--- 70

  Fly    77 FLLFFRRYKMTKLHEVYADLNRQYGDIVLEVMPSNVPIVHLYNRDDLEKVLKYPSKYPFRPPTEI 141
            .:........|.||:.....::|||.|..|.:......|.:.:.:.:..|.::..:||..|..:.
  Fly    71 LVDLIAAGGATHLHKYIDARHKQYGPIFRERLGGTQDAVFVSSANLMRGVFQHEGQYPQHPLPDA 135

  Fly   142 IVMYRQSRPDRYASVGIVNEQGPMWQRLRSSLTSSITSPRVLQNFLPALNAVCDDFIELLRARRD 206
            ..:|.|...   ...|:...:|..|...|..|...:.:..:  |::......|...:.....||.
  Fly   136 WTLYNQQHA---CQRGLFFMEGAEWLHNRRILNRLLLNGNL--NWMDVHIESCTRRMVDQWKRRT 195

  Fly   207 PDTLVVPNFE-------ELANL------MGLEAVCTLMLGRRMGFLAIDTKQPQKISQLAAAVKQ 258
            .:...:|..|       ||..|      ..:|.:|.:|.|..   :....|....:......|.:
  Fly   196 AEAAAIPLAESGEIRSYELPLLEQQLYRWSIEVLCCIMFGTS---VLTCPKIQSSLDYFTQIVHK 257

  Fly   259 LF-ISQRDSYYGLGLWKYFPTKTYRDFARAEDLIYDVISEIIDHELEELKKSAACEDDEAAGLRS 322
            :| .|.|...:...|.:......:|||....|.:....:.||||.: .:::......|||...| 
  Fly   258 VFEHSSRLMTFPPRLAQILRLPIWRDFEANVDEVLREGAAIIDHCI-RVQEDQRRPHDEALYHR- 320

  Fly   323 IFLNILELKDLDIRDKKSAIIDFIAAGIETLANTLLFVLSSVTGDPGAMPRILSEFCEYRDTNIL 387
                 |:..|:.....|...:|.:.|..:|.|.:..:.|.:::.:|....|:..|    |.||  
  Fly   321 -----LQAADVPGDMIKRIFVDLVIAAGDTTAFSSQWALFALSKEPRLQQRLAKE----RATN-- 374

  Fly   388 QDALTNATYTKACIQESYRLRPTAFCLARILEEDMELSGYSLNAGTVVLCQNMIACHKDSNFQGA 452
                 ::......|:||.||.|.|..:.|.|.:|.:|.|:.:...|:||.....|....|:|:..
  Fly   375 -----DSRLMHGLIKESLRLYPVAPFIGRYLPQDAQLGGHFIEKDTMVLLSLYTAGRDPSHFEQP 434

  Fly   453 KQFTPERWIDPATENFTVNVDNASIVVPFGVGRRSCPGKRFVEMEVVLLLAKMVLAFDVSFVK-- 515
            ::..||||....||.  |:..:.|:  ||.:|:|||.|:|....::..||.:....|::|.:.  
  Fly   435 ERVLPERWCIGETEQ--VHKSHGSL--PFAIGQRSCIGRRVALKQLHSLLGRCAAQFEMSCLNEM 495

  Fly   516 PLETEFEFLLAPKTPLSLRLSDR 538
            |:::....:..|...|.|.|..|
  Fly   496 PVDSVLRMVTVPDRTLRLALRPR 518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shdNP_001261843.1 p450 63..528 CDD:299894 109/480 (23%)
sadNP_650123.1 p450 63..497 CDD:299894 107/466 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0159
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D185685at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.820

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