DRSC/TRiP Functional Genomics Resources

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Protein Alignment shd and Cyp313a5

DIOPT Version :9

Sequence 1:NP_001261843.1 Gene:shd / 39592 FlyBaseID:FBgn0003388 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_650168.1 Gene:Cyp313a5 / 41486 FlyBaseID:FBgn0038005 Length:487 Species:Drosophila melanogaster


Alignment Length:493 Identity:105/493 - (21%)
Similarity:189/493 - (38%) Gaps:91/493 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 RRRRGIW--DIPGPKRIPFLGTKWIFLLFFRRYKMTKLHEVYADLNRQYGDIVLEVMPSNVPIVH 116
            |||..|.  .:|||...||:|..:.::...|:.::..:      |.:.||..||..: ...|::.
  Fly    22 RRRFYIMMLKLPGPMGFPFIGLAFEYIRLKRKIRLRTI------LFKIYGKTVLTWI-GLTPVLV 79

  Fly   117 LYNRDDLEKVLKYPSKYPFRPPTEIIVMYRQSRPDRYAS----VGIVNEQGPMWQRLRSSLTSSI 177
            ......||.:...|:           ...|.|..|:..|    :|::..:...|...|..|..|.
  Fly    80 TCEPKILEDIFTSPN-----------CSNRSSVVDKAISSCLGLGLLTLKNNHWNERRKLLLPSF 133

  Fly   178 TSPRVLQNFLPALNAVCDDFIELLRARRD-PDTLVVPNFEELANLMGLEAVCTLMLGRRM----- 236
            .:..|| :|:|.||...:..:.||....| .|..::|..    |....:....:.:|..:     
  Fly   134 KNNAVL-SFVPVLNNEANFLVTLLAEFVDGGDINLLPEL----NKWSFKIAAQITMGDEVRNQAN 193

  Fly   237 ---GFLAIDTKQPQKISQLAAAVKQLFISQRDSYYGLGLWKYFPTKTYRDFARAEDLIYDVISEI 298
               |.|....|....:..:...:..|    |:.|.|    |.|..:..|..|..:...:  |.:|
  Fly   194 YQNGNLLESYKALNNLIPIGVVMPWL----RNKYLG----KLFSYEKRRLEAATQSNAF--IKDI 248

  Fly   299 IDHELEELKKSAACEDDEAAGLRSIFLNILELKDLDIRDKKSAIIDFIAAGIETLANTLLFVLSS 363
            ||      ||.::.::.....|....||::.:.:|...|......:.|.|..:||:.|:..||. 
  Fly   249 ID------KKLSSTDNSSEPALIDRILNLVRIGELSYDDVMGEFSNIIFAASDTLSITVNNVLI- 306

  Fly   364 VTGDPGAMPRILSEFCEYRDTNILQDA----------------LTNATYTKACIQESYRLRPTAF 412
                      :::.|.:|:| |:.::.                |.........:.|:.||.|...
  Fly   307 ----------LMAMFPKYQD-NVFEELAEVFPSGGEFEASHADLEKLVKLDRVLHETMRLIPAVP 360

  Fly   413 CLARILEEDMELS-GYSLNAGTVVLCQNMIACHKDSNFQG--AKQFTPERWIDPATENFTVNVDN 474
            .|.|.....::|| |:.:..| |.|..::...|::.:..|  |..|.|:.::   .||.......
  Fly   361 LLIRQTSHSIQLSNGFYIPEG-VTLMIDIFHTHRNKDIWGPQANAFNPDNFL---PENKRARPPY 421

  Fly   475 ASIVVPFGVGRRSCPGKRFVEMEVVLLLAKMVLAFDVS 512
            :  .:||..|:::|.|.:...:...|.|||::..:.:|
  Fly   422 S--YLPFSKGKKTCLGWKLSLISAKLALAKILRNYMLS 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shdNP_001261843.1 p450 63..528 CDD:299894 101/482 (21%)
Cyp313a5NP_650168.1 p450 33..458 CDD:299894 101/482 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24305
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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