DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shd and cyp-34A6

DIOPT Version :9

Sequence 1:NP_001261843.1 Gene:shd / 39592 FlyBaseID:FBgn0003388 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_001256031.1 Gene:cyp-34A6 / 181848 WormBaseID:WBGene00015041 Length:498 Species:Caenorhabditis elegans


Alignment Length:520 Identity:117/520 - (22%)
Similarity:212/520 - (40%) Gaps:97/520 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 IW----DIP-GPKRIPFLGTKWIFLLFFRRYKMTKLHEVYADLNRQYGDIVLEVMPSNVPIVHLY 118
            ||    .:| ||..||.:|.  ...||:..::...:.|...::.:|||. |..:....:|:|::.
 Worm    18 IWRAWRKLPNGPLPIPLIGN--FHQLFYYAWRFGGIVEGIKEMKKQYGK-VFTLWMGPLPMVNIC 79

  Fly   119 NRD-----DLEKVLKYPSKYPFRPPTEIIVMYRQSRPDRYASVGIVNEQGPMW-QRLRSSLTS-- 175
            :.|     .:::...:.::| ....||.|   |:.|       ||:...|..| :..|.:||:  
 Worm    80 DYDIAYETHVKRANIFVNRY-IHGATEYI---REGR-------GIIGSNGDFWLEHRRFALTTFR 133

  Fly   176 ------SITSPRVLQNFLPALNAVCDDFIELLRARRDPDTLVVPNFEELANLMGLEAVCTLMLGR 234
                  :|...::::.:    |...:||.|             .:|:..|..:.......|::|.
 Worm   134 NFGIGRNIIEGKIMEEY----NYRFEDFHE-------------THFKNGAIQVSASMFFDLLVGS 181

  Fly   235 RMGFLAIDTKQPQKISQLAAAVKQLFISQRDSYYGLG---LW----KYFPTKTYRDFARAEDLIY 292
            .:..|.:..:..|...:......:|.::..:|....|   ||    |:...:|...|| ..|.||
 Worm   182 IINQLLVSERFEQDDKEFEELKTKLTMALENSSIIEGVMPLWLLKSKFMKWRTKTTFA-PFDFIY 245

  Fly   293 DVISEIIDHELEELKKSAACEDDEAAGLRSIFLNILELKDLDIRDKKSAI-------------ID 344
            :|..:.|...:..::.......:|.......|:..:|      :|.|..:             .|
 Worm   246 EVGQKGIQRRVAAIENGTHVLSEEGDDFVDAFIIKIE------KDSKEEVESTFTLETLAVDLFD 304

  Fly   345 FIAAGIETLANTLLFVLSSVTGDPGAMPRILSEFCE----YRDTNILQDALTNATYTKACIQESY 405
            ...||.||.:.||.:....:...|..:.::.:|..|    .|..::...:.|  .|..|.|.|..
 Worm   305 LWVAGQETTSTTLCWAFVCLMNYPEVVEKLRNELTEVTGGMRSVSLADRSST--LYLNATINEIQ 367

  Fly   406 RLRPTA-FCLARILEEDMELSGYSLNAGTVVLCQNMIACH-KDSNFQGAKQFTPERWIDPATENF 468
            |:.... ..|.|:||||..:.|..:.|||....| :.|.| .|..|:..|:|.|||:::      
 Worm   368 RIASILNVNLPRVLEEDALIDGVLVPAGTAFATQ-LSAMHTDDETFKNHKEFNPERFME------ 425

  Fly   469 TVNVDNASIVVPFGVGRRSCPGKRFVEMEVVLLLAKMVLAFDVSFV---KPLETEFEFLLAPKTP 530
              |.:....::|||:|:|||||:.....|:.|::|.:|:.:::..|   ..::|...|.|..:.|
 Worm   426 --NNNLEKKLIPFGIGKRSCPGESLARAELYLIIANIVMEYEIEPVGATPKMKTPTPFSLLKRPP 488

  Fly   531  530
             Worm   489  488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shdNP_001261843.1 p450 63..528 CDD:299894 114/508 (22%)
cyp-34A6NP_001256031.1 p450 26..494 CDD:278495 115/512 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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