DRSC/TRiP Functional Genomics Resources

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Protein Alignment shd and LOC100496967

DIOPT Version :9

Sequence 1:NP_001261843.1 Gene:shd / 39592 FlyBaseID:FBgn0003388 Length:540 Species:Drosophila melanogaster
Sequence 2:XP_031760480.1 Gene:LOC100496967 / 100496967 -ID:- Length:438 Species:Xenopus tropicalis


Alignment Length:493 Identity:123/493 - (24%)
Similarity:216/493 - (43%) Gaps:102/493 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 MTKLHEVYADLNR---------QYGDIVLEVMPSNVPIVHLYNRDDLEKVLKYPSKYPFRPPTEI 141
            |.|.|:.:..:.:         |.||..:                 ||..|:..|.||.|...:.
 Frog     1 MFKYHQKFGKIFKMNLGFFKSVQIGDPTM-----------------LETFLRTESIYPKRMDIKP 48

  Fly   142 IVMYRQSRPDRYASVGIVNEQGPMWQRLRSSLTSSITSPR-----------VLQNFLPALNAVCD 195
            ..|||..|.:   :.|::...|..|.::|.:..:.:..|:           |:.:|:|.::.:||
 Frog    49 WKMYRDYREE---ACGLLILDGQEWFQMRRATQNKLMKPKEIFPMDLRINEVMADFIPYIDNICD 110

  Fly   196 DFIELLRARRDPDTLVVPNFEELANLMGLEAVCTLMLGRRMGFLAIDTKQPQKISQLAAAVKQLF 260
            :           :..:...:.|| |.:..|.:|.::...|.|.|    :|..|...|      ||
 Frog   111 E-----------NGCIADLYSEL-NKLSYETICYVLYNERYGLL----QQTCKEEAL------LF 153

  Fly   261 I-SQRDSYYGLG--------LWKYFPTKTYRDFARAEDLIYDVISEIIDHELEELKKSAACEDDE 316
            | |.::..|.||        |.|.|.||.:::..:|.|.|:..:...||..|.:          .
 Frog   154 IKSVKEMMYYLGPLIVSSAELHKKFNTKQWQNHTKAWDNIFLTVKRCIDKSLAQ----------N 208

  Fly   317 AAGLRSIFLNILELKDLDIRDKKSAII-DFIAAGIETLANTLLFVLSSVTGDPGAMPRILSEF-- 378
            :.|.|...|:::...:|..|.:...|. :....|:||.||:|::::..::.:.....::|.|.  
 Frog   209 SVGKRDHLLHVINSDNLLTRKQLYGIFAELQIGGVETTANSLMWIMLHLSRNKDVQQKLLEEIQS 273

  Fly   379 -C-EYR--DTNILQDALTNATYTKACIQESYRLRPTAFCLARILEEDMELSGYSLNAGTVVLCQN 439
             | .|:  ..::||    :..|.|:||:||.||.||....:|.||||..:.||.:..||:.:...
 Frog   274 TCPSYQAPTASMLQ----SLPYLKSCIKESMRLTPTVPFTSRTLEEDTNIGGYLIPQGTIAMINF 334

  Fly   440 MIACHKDSNFQGAKQFTPERWIDPATENFTVNVDNASIVVPFGVGRRSCPGKRFVEMEVVLLLAK 504
            ......|..|..|:::.||||:   .:..|:   |.....|||:|:|.|.|:|..|:::.|.|..
 Frog   335 HAMTWNDEFFPHAQEYKPERWM---KDKHTI---NPFAHTPFGIGKRMCIGRRLAELQLQLTLCW 393

  Fly   505 MVLAFDVSFV--KPLETEFEFLLAP--KTPLSLRLSDR 538
            :|..|.::.:  :|::.....|:.|  :.|:||:..||
 Frog   394 LVKNFHINAIDEEPVKAIVSGLMIPARELPVSLKRRDR 431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shdNP_001261843.1 p450 63..528 CDD:299894 118/481 (25%)
LOC100496967XP_031760480.1 cytochrome_P450 5..423 CDD:425388 116/479 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D185685at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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