DRSC/TRiP Functional Genomics Resources

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Protein Alignment shd and XB1001094

DIOPT Version :9

Sequence 1:NP_001261843.1 Gene:shd / 39592 FlyBaseID:FBgn0003388 Length:540 Species:Drosophila melanogaster
Sequence 2:XP_002933985.3 Gene:XB1001094 / 100496109 XenbaseID:XB-GENE-1001095 Length:546 Species:Xenopus tropicalis


Alignment Length:520 Identity:119/520 - (22%)
Similarity:228/520 - (43%) Gaps:81/520 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 KRRRRGIWDIPGPKRIPFLGTKWIFLLFFRRYKMTKLHEVYADLNRQYGDIVLEVMPSNVPIVHL 117
            :::.:...|:|||..:  ....|:||..:..|    .||:.|...:.||.:....: .....|::
 Frog    68 EKKMKTFEDLPGPSLL--TNIYWVFLRGYILY----THELQAIYKKNYGPMWKSTL-GRYKTVNI 125

  Fly   118 YNRDDLEKVLKYPSKYPFRPPTEIIVMYRQSRPDRYASVGIVNEQGPMWQRLRSSLTSSITSPRV 182
            .:.|.||.||:...|||.|...|:   :::.|..|..|:|...|:|..|..|||.|...:..|..
 Frog   126 ADVDILETVLRQEGKYPMRSDMEV---WKEHRRQRDLSLGPFTEEGHKWHTLRSVLNKRMLKPAE 187

  Fly   183 LQNFLPALNAVCDDFIELLRARRD--PDTLVVPNFEELANLMGLEAVCTLMLGRRMGFL--AIDT 243
            ...:...:|.|..||:..|...|.  |...:|.:..........|.:..::...|:|.|  .|..
 Frog   188 AMLYTGVVNEVVTDFLVRLEEMRSETPSGDMVNDIPNALYRFAFEGISYILFETRIGCLEKQIPV 252

  Fly   244 KQPQKISQLAAAVK-QLFISQRDSYYGLGLWKYFPTKT------YRDFARAEDLIYDVISEIIDH 301
            :..:.|..:.|.:| .:|::            .||..|      |:.:..:.|.|:...:::|:.
 Frog   253 ETQRFIDSIGAMLKNSIFVT------------IFPPWTNNLLPYYKRYMDSWDNIFAFGNKLINE 305

  Fly   302 ELEELKKSAACEDDEAAGLRSIFLNIL----ELKDLDIRDKKSAIIDFIAAGIETLANTLLFVLS 362
            ::::::  |..|.||.  ::..:|..|    :|.|.:|   ..::.:.:.||::|.:|||.:.|.
 Frog   306 KMKKIE--ARLERDEE--VQGEYLTYLISSGKLTDKEI---YGSVAELLLAGVDTTSNTLSWALY 363

  Fly   363 SVTGDP-----------GAMPRILSEFCEYRDTNI-LQDALTNATYTKACIQESYRLRPTAFCLA 415
            .:..:|           |.:|          ..|| ..:.:::....:|.|:|:.||.|.....:
 Frog   364 HLAREPEIQNALYQEVIGVVP----------GQNIPTSEDMSSMPLLRAVIKETLRLYPVVPTNS 418

  Fly   416 RI-LEEDMELSGYSLNAGTVVLCQNMIACHKDSNFQGAKQFTPERWIDPATENFTVNVDNASIVV 479
            |: :|:.:.:..|.....|::...:......:.||..:.:|.|:||.   .|:...|  |....:
 Frog   419 RVAVEKAITIGDYYFPKDTLIALHHYHISRDEKNFPESDKFIPQRWF---RESRVKN--NPFSSI 478

  Fly   480 PFGVGRRSCPGKRFVEMEVVLLLAKMVLAFDVSFVKP------LETEFEFLLAPKTPLSLRLSDR 538
            |||.|.|:|.|:|..|:|:.:.|::::..::   |:|      :::....:|.|..|::||...|
 Frog   479 PFGYGVRACVGRRIAELEMHMCLSRIIKKYE---VRPDPSGAEIKSMARIVLTPHKPINLRFLPR 540

  Fly   539  538
             Frog   541  540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shdNP_001261843.1 p450 63..528 CDD:299894 113/498 (23%)
XB1001094XP_002933985.3 cytochrome_P450 106..535 CDD:425388 105/469 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D185685at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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