DRSC/TRiP Functional Genomics Resources

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Protein Alignment bbg and Pard3b

DIOPT Version :9

Sequence 1:NP_001246755.1 Gene:bbg / 39583 FlyBaseID:FBgn0087007 Length:2637 Species:Drosophila melanogaster
Sequence 2:XP_006496361.1 Gene:Pard3b / 72823 MGIID:1919301 Length:1238 Species:Mus musculus


Alignment Length:653 Identity:137/653 - (20%)
Similarity:220/653 - (33%) Gaps:215/653 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1991 PLQPRSMMIPPPPPPLDQESDTDSVFSHTAR--VATPPEKFALTRTLSS-ETNTSIASSNTSTLT 2052
            |||...   .|...|.|::| .|:..:..|.  .|..|....:..|.|: :..|.:....:|...
Mouse   119 PLQKTE---SPGGNPADRQS-PDAFETEVAAQLAAFKPVGGEIVVTPSALKLGTPLLVRRSSDPA 179

  Fly  2053 SGSSAGSQASCSSLGS---TPAV-DLTRRVLKSQVINGEAVALSS--RKSILASAKCRSAKSRGQ 2111
            .|..|.:|.|.:||..   .|.| |.|:.|...:.:|||...|.|  |.....|...|:.:..|:
Mouse   180 PGPHADAQPSTASLSGQSLKPVVLDSTQNVENKEAMNGEQAGLLSLHRPKDELSDMTRAVEISGE 244

  Fly  2112 EED--------NDSTDGEACSLANRRMKPISSYKLQQQQIQLGKQLVVDKLINVAAYVELTSDTD 2168
            .:.        ..|..|....|..|.::..|..| |:...|..:.:|  |:.||....:..:...
Mouse   245 GDPLGIHVVPFFSSLSGRILGLFIRGIEENSRCK-QEGLFQENECIV--KINNVELLDKTFAQAQ 306

  Fly  2169 DSSRRS-DTPAKISAMFIDEERKASFK---------GDPNQQAKVKVEQVKPMVLPMLLPSAKRE 2223
            |..|:: .:|:.|..:.:.:.|:...|         |:.:..::.|.           .|.|:.:
Mouse   307 DVFRQAMKSPSVILHVLLPQNREQYEKSVIGPLNIFGNNDGASRTKA-----------APPARGK 360

  Fly  2224 P-LKQ-QTTAELREKFERSAAAQAQTQNHSPVIHKVTQKPHHERFSSLDSLASSSSGVSSTTQNV 2286
            | ||. ..|.....:.|..|:.|   |:.||.:.::.:||.....|.|....|..:         
Mouse   361 PGLKAVHLTRASSPEGEEPASPQ---QSKSPRVPRLGRKPSSPSLSPLMGFGSKKN--------- 413

  Fly  2287 STTQETATEFGSFSSLGSNQSLITAQDVQQIVEEADPPLKTPE--AFIIVLQRENPESSIGITLA 2349
                                    |:.::..::      |.||  .|.:|.:    :|||     
Mouse   414 ------------------------AKKIKIDLK------KGPEGLGFTVVTR----DSSI----- 439

  Fly  2350 GGSDYEAKEITIHKILSNTPAAKDGRLKKGDRILAVNGMSMRGLTHRESISVLK-TPRPEVV-LV 2412
                :....|.:..||....|.|||||:.|||||.|||..:.|.|..|.:::|: |.:.|.| ||
Mouse   440 ----HGPGPIFVKNILPKGAAVKDGRLQSGDRILEVNGRDVTGRTQEELVAMLRSTKQGETVSLV 500

  Fly  2413 VTRSESLVVKALTKKRSSLGSLSSLNEKPTELDYERKRNYHKASRSLDLDLDLVSNEAGESPVAT 2477
            :.|.|              ||.     .|.||..|..........|..|.|::..|::|      
Mouse   501 IARQE--------------GSF-----LPRELKGEPDCYALSLESSEQLTLEIPLNDSG------ 540

  Fly  2478 TPSTGSVSPPQPASLHDEDAEATIAGIRARRQLSRGDAAKLSTSELLERAAEARNAIAAEIRAQA 2542
                                                                             
Mouse   541 ----------------------------------------------------------------- 540

  Fly  2543 EDAAASGGGARCVEIVKDSCGLGFSIEGGFDSPLG-NRPLIVKKVFMGGAAQKTNQVRNGDEILS 2606
                              |.|||.|::|......| :..:.:|.:..||||.|..::|..|::::
Mouse   541 ------------------SAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIA 587

  Fly  2607 ING 2609
            :||
Mouse   588 VNG 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bbgNP_001246755.1 PDZ_signaling 90..177 CDD:238492
ATP-synt_B <1084..>1109 CDD:304375
PDZ_signaling 2331..2413 CDD:238492 30/83 (36%)
PDZ_signaling 2553..2634 CDD:238492 17/58 (29%)
Pard3bXP_006496361.1 DUF3534 2..74 CDD:338230
PDZ_signaling 236..323 CDD:238492 18/89 (20%)
PDZ 415..504 CDD:214570 34/107 (32%)
PDZ_signaling 536..624 CDD:238492 19/144 (13%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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