DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bbg and Pdzk1

DIOPT Version :9

Sequence 1:NP_001246755.1 Gene:bbg / 39583 FlyBaseID:FBgn0087007 Length:2637 Species:Drosophila melanogaster
Sequence 2:NP_113900.1 Gene:Pdzk1 / 65144 RGDID:70924 Length:523 Species:Rattus norvegicus


Alignment Length:617 Identity:128/617 - (20%)
Similarity:195/617 - (31%) Gaps:241/617 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   990 TLSERGKQLSEKEG-----------------LTTYTECETSEKESYLEGQQVLNGKGGFVSQDEN 1037
            |.:.|..:||:|||                 :....|...:||...|:|.:||...|.||.::|:
  Rat     4 TFNPRECKLSKKEGQNYGFFLRIEKDTDGHLVRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEH 68

  Fly  1038 SDQPTYEREVSETLT-IVNDGEKQVTKKLEQNKEIAGKKGAKLLKKTDEERRLEQEAQKLIESYQ 1101
            :......|:...::| :|.||                                        :||:
  Rat    69 AQVVDLVRKSGNSVTLLVLDG----------------------------------------DSYE 93

  Fly  1102 KVKKEAEKLYKLELADDDQGFDLSAFEQAEEEDKPEVSEE--------------IKE-------V 1145
            |..|     ::::|.:.||    |..|.|..|.||::...              :||       :
  Rat    94 KAVK-----HQVDLKELDQ----SPREPALNEKKPDLGMNGGVETCAQPRLCYLVKEGNSFGFSL 149

  Fly  1146 KDSQPVK----VDIQIEEEVKTPNQV-----------IGEVKVEDV----NKEIKETVQVSQQEI 1191
            |..|..|    .||       ||..|           :.||..|:|    ::|:.|.|..|...|
  Rat   150 KTIQGKKGVFLTDI-------TPQGVAMKAGVLADDHLIEVNGENVENASHEEVVEKVTKSGSRI 207

  Fly  1192 -----KKEVKVSHQETKETFKSEEKDESNELKIVKEEVKVT----------------HQDLREQI 1235
                 .||....|.|.|..||.    |:..||::..:.:|.                .:...:.|
  Rat   208 MFLLVDKETARCHSEQKTPFKR----ETASLKLLPHQPRVVVIKKGSNGYGFYLRAGPEQKGQII 268

  Fly  1236 QEIE---------------AVKVVHKEVKVIKESAKVTTTTSHKQATKEVIISKEDHKNDSALPA 1285
            ::||               .|.|..:.|:.:...:.|....:....|..:::.||         |
  Rat   269 KDIEPGSPAEAAGLKNNDLVVAVNGESVEALDHDSVVEMIRNGGDQTTLLVLDKE---------A 324

  Fly  1286 VSTTKVEIISPPLEDDLGYVLHKHIIFPQEKVKTAPTPLPKPKPKP------PVPTNKPKMPVNL 1344
            .....:...||.|     |...:.:  |...||.||.|:..|...|      .|..:|||: ..|
  Rat   325 DRIYSLARFSPLL-----YCQSQEL--PNGSVKEAPAPISAPLEAPGSATTEDVGDHKPKL-CRL 381

  Fly  1345 TKPKSAPPPVPSKRSELSGSGGKP----------TPTQRRGSLETAQ----------PPKPLERI 1389
            .|...      |....|:...|:|          .|..:.| ||...          ..:|.:|:
  Rat   382 IKEDD------SYGFHLNAIRGQPGSFVKEVQQGGPADKAG-LENEDIIIEVNGENVQDEPYDRV 439

  Fly  1390 IVGVEQRDE---------------PEKPQPIINLASVDLPNVAPNSKQATVETTPVVEMPPDELQ 1439
            :..::...|               ..|..||  |:|:..|.||                .|||..
  Rat   440 VERIKSSGEHVTLLVCGKVAYSYFQAKKIPI--LSSLADPLVA----------------GPDEKG 486

  Fly  1440 FESHQLPDDGEKEKDLHQESND-LLSGSSSSS 1470
            ...|   |..|..||....:.| .||.:|.||
  Rat   487 ETEH---DSAESTKDSSHPARDRTLSAASHSS 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bbgNP_001246755.1 PDZ_signaling 90..177 CDD:238492
ATP-synt_B <1084..>1109 CDD:304375 4/24 (17%)
PDZ_signaling 2331..2413 CDD:238492
PDZ_signaling 2553..2634 CDD:238492
Pdzk1NP_113900.1 PDZ_signaling 7..87 CDD:238492 19/79 (24%)
PDZ 132..212 CDD:214570 19/86 (22%)
PDZ_signaling 242..320 CDD:238492 9/77 (12%)
PDZ 375..455 CDD:214570 16/87 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 479..523 16/56 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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