DRSC/TRiP Functional Genomics Resources

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Protein Alignment bbg and lnx2b

DIOPT Version :10

Sequence 1:NP_648705.2 Gene:bbg / 39583 FlyBaseID:FBgn0087007 Length:2637 Species:Drosophila melanogaster
Sequence 2:NP_998105.2 Gene:lnx2b / 564464 ZFINID:ZDB-GENE-040426-2500 Length:678 Species:Danio rerio


Alignment Length:611 Identity:130/611 - (21%)
Similarity:220/611 - (36%) Gaps:188/611 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  2175 DTPAKISAMFIDEERKASFKGD----PNQQAKVKVEQVKP---MVLPMLLPSAKREPLKQQTTAE 2232
            |||...:..|   :..::|..|    |..:.:::::|.:.   :|..:|...|...|.:.:....
Zfish    58 DTPCGHTYCF---QCLSNFLHDQDFCPVDRQRIQLQQCRASSLLVRNLLDKLAVLCPFRSECELS 119

  Fly  2233 LREKFERSAAAQAQTQNHSPVIHKVTQKPHHERFSSLDSL-ASSSSGVSSTTQNVSTTQETATEF 2296
            ::.     ...|....|..|...::.::...::..|.:.| .|.|.|..:..::..|...||.  
Zfish   120 MQR-----CELQPHLHNRCPAFKRLREEAERKKRPSWNELKGSKSDGDLADAKSAQTIGRTAQ-- 177

  Fly  2297 GSFSSLGSNQSLITAQDVQQIVEEA--DPPLK---TPEAFIIVLQRENPESSIGITLAGGSDYEA 2356
               .|..|...|     |....||.  |.||:   ..||.::.|.||:|...:|:.:.||.|...
Zfish   178 ---LSAPSEPGL-----VNPAFEEGEDDTPLRCSLVAEATVVELFREDPGEDLGLRIVGGKDTPL 234

  Fly  2357 KEITIHKILSNTPAAKDGRLKKGDRILAVNGMSMRGLTHRESISVLK----------------TP 2405
            ..|.|.:|:.::..|:||:|..||.||.||.:|:..::|..:|:|::                .|
Zfish   235 GNIVIQEIVRDSLVARDGKLAPGDHILEVNDVSLASISHSRAIAVIRQPCSRLRLTVMQEKGFKP 299

  Fly  2406 RPE---------------------VVLVVT-----RSESLVVKALTKKRSS--------LGSLSS 2436
            |||                     .|:.||     |||:|.:|.:.|....        .|.|::
Zfish   300 RPEHHTQPSASPPTQSPSTNQNHGTVIQVTLVKHERSEALGIKLIRKSEEPGVFILDLLPGGLAA 364

  Fly  2437 L------NEKPTELDYERKRNYHKASRS------------LDLDLDLVSNEAGE----------- 2472
            .      |:|...::.:..|:....|.:            :.:.|..||.|.||           
Zfish   365 KDGKLRNNDKVLGINGQDLRHGTPESAAQIIQASEMRVNFVVMRLQDVSEEGGEGQSRGARRVPE 429

  Fly  2473 -------SPVATTPSTGSVSPPQPASLHDEDAEA---TIAGIRARRQ--------------LSRG 2513
                   |.....|..|..|..:..:|..|..::   ||||.|..|.              |.|.
Zfish   430 PQYFRRHSEYMKEPPGGFSSQEKTVTLKKEPRQSLGITIAGGRDCRSRLPVYITSVQPVGCLHRD 494

  Fly  2514 ---------------DAAKLSTSELLE--RAAEARNAIAAE-IRAQAEDAAASG-GGAR------ 2553
                           |...|:.:|.:.  :...|::.:... |:..|:|....| .|:|      
Zfish   495 GTVKTGDVLLSINGIDLTHLTYNEAVTVLKTQTAQSTVTLRVIQTFADDEEQDGESGSREDMDTM 559

  Fly  2554 ----------------------CVEIVKD-------SCGLGFSIEGGFDSPLGNRPLIVKKVFMG 2589
                                  |:...:|       |...||||.||::...|.:|..:|.:..|
Zfish   560 EGPKDDDINWVPLWTRWLGLPSCIHWCRDIMLMKTNSESWGFSIVGGYEESRGQQPFFIKTIVPG 624

  Fly  2590 GAAQKTNQVRNGDEILSINGASTSRM 2615
            ..|....:::.||||:::||.:|..|
Zfish   625 TPAYFDGRLKCGDEIVAVNGVTTVGM 650

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bbgNP_648705.2 PDZ_canonical 90..177 CDD:467153
PHA03247 <341..617 CDD:223021
PTZ00341 <926..1237 CDD:173534
PDZ6_PDZD2-PDZ3_hPro-IL-16-like 2330..2415 CDD:467243 33/126 (26%)
PDZ7_PDZD2-PDZ4_hPro-IL-16-like 2552..2636 CDD:467244 23/99 (23%)
lnx2bNP_998105.2 mRING-HC-C3HC3D_LNX2 41..85 CDD:319694 7/29 (24%)
PDZ1_LNX1_2-like 206..294 CDD:467165 27/87 (31%)
PDZ2_LNX1_2-like 326..408 CDD:467166 14/81 (17%)
PDZ3_LNX1_2-like 452..538 CDD:467167 14/85 (16%)
PDZ4_LNX1_2-like 587..675 CDD:467168 21/64 (33%)
Blue background indicates that the domain is not in the aligned region.

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