DRSC/TRiP Functional Genomics Resources

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Protein Alignment bbg and ush1c

DIOPT Version :9

Sequence 1:NP_001246755.1 Gene:bbg / 39583 FlyBaseID:FBgn0087007 Length:2637 Species:Drosophila melanogaster
Sequence 2:XP_009296312.1 Gene:ush1c / 564412 ZFINID:ZDB-GENE-060312-41 Length:586 Species:Danio rerio


Alignment Length:429 Identity:100/429 - (23%)
Similarity:164/429 - (38%) Gaps:126/429 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  2274 SSSSGVSSTTQNVSTTQETAT----EFGSFSSLGSNQSLITAQDVQQIVEEADPPLKTPEAFIIV 2334
            |.||.:.....|:..|::|.:    ..|......|:...:..|.|.|.|.|:.            
Zfish   141 SISSCIHEEVINLIKTKKTVSLKVRHVGMIPVKSSSDEPLKWQFVDQFVSESG------------ 193

  Fly  2335 LQRENPESSIGITLAGGSDYEAKEITIHKI--------LSNTPAAKDG---------------RL 2376
               |...|..|:...||::.:.|::.:..:        :|:.|..|.|               .|
Zfish   194 ---EKSNSIAGLASIGGNEIKEKKVFLSLVGTKGMGISISSGPTKKPGIYVSNVKPGSLSAEVGL 255

  Fly  2377 KKGDRILAVNGMSMRGLTHRESISVLKTPRPEVVLVVTRS---------ESLVVKALTKKRSSLG 2432
            :.||:|:.|||:....|:|:|::.|||:.|...:.|:|.:         |.|.|:|    |..|.
Zfish   256 QVGDQIVEVNGVEFTNLSHQEAVRVLKSSRSLTITVLTGAGSELFMTDEERLAVEA----RHELD 316

  Fly  2433 SLSSLNEKPTEL----------DYERKRNYHKASRSLDLD----LDLVSNEAGE----------- 2472
            ....:::|...|          :.||:|....:.::.:.:    .::...||.|           
Zfish   317 RQELMHQKKVALETNKIVKEQQEKERQRKMEISQKAAEEEERYRKEMERIEAAEKKHHKEWEDDW 381

  Fly  2473 ---------SPVATTPSTGSVSPPQPASLHDEDAEATIAGIRARRQLSRGDAAKLSTSELLERAA 2528
                     ||.|      |.|||.|..|.......|          |..|:.:..|.|..::..
Zfish   382 GSKEKKKSVSPAA------SPSPPPPTRLAPSPKPKT----------STADSYEEETGEGFQKYV 430

  Fly  2529 ---EARNAIAAEIRAQAEDAAASGGGARCVEIVKDSCGLGFSIEGGFDSPLGNRPLIVKKVFMGG 2590
               :..:...||        ..:|...|.:.|.|:. .|..:||||.|||||.  ::|..::.||
Zfish   431 DDFDPHSMFTAE--------QIAGRDVRLLRIKKEG-KLDLAIEGGIDSPLGK--IVVSSIYEGG 484

  Fly  2591 AAQKTNQVRNGDEILSINGASTSRMTRVD-------AWN 2622
            ||.|...|.:||||:::||...:.:|..:       |||
Zfish   485 AADKHGGVVSGDEIMAVNGKILTDVTLAEGQTSMAQAWN 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bbgNP_001246755.1 PDZ_signaling 90..177 CDD:238492
ATP-synt_B <1084..>1109 CDD:304375
PDZ_signaling 2331..2413 CDD:238492 24/104 (23%)
PDZ_signaling 2553..2634 CDD:238492 30/77 (39%)
ush1cXP_009296312.1 harmonin_N 2..80 CDD:259819
PDZ_signaling 85..165 CDD:238492 6/23 (26%)
PDZ_signaling 212..292 CDD:238492 19/79 (24%)
RILP-like 317..>379 CDD:304877 8/61 (13%)
PDZ_signaling 447..534 CDD:238492 30/80 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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