DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bbg and lnx2a

DIOPT Version :10

Sequence 1:NP_648705.2 Gene:bbg / 39583 FlyBaseID:FBgn0087007 Length:2637 Species:Drosophila melanogaster
Sequence 2:NP_001106696.2 Gene:lnx2a / 553331 ZFINID:ZDB-GENE-060228-2 Length:737 Species:Danio rerio


Alignment Length:546 Identity:117/546 - (21%)
Similarity:200/546 - (36%) Gaps:78/546 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly  2125 LANRRMKPISSYKLQQQQIQLGKQLVVDKLINVAAYVELTSDTDDSSRRSDTPAKISAMFIDEER 2189
            |..|...|:....||.|..:....||...|..::....||.....|..|.|..|.:         
Zfish    77 LQERDFCPLDRAHLQLQVCRRSSILVHKLLDKLSVTCPLTPSCSLSMPRCDLEAHL--------- 132

  Fly  2190 KASFKGDPNQQAKV---KVEQVKPMVLPMLLPSAKREPLKQQTTAELREKFERSAAAQAQTQNHS 2251
            |....|..:|:.|:   ::|..:..|.....|.:.:..:|:.|.:   .....:|.....|....
Zfish   133 KHRCPGTQSQRTKLERTQMEGSEDRVTATNPPKSPQTEIKEDTPS---PPAGSNACNNVPTWTEE 194

  Fly  2252 PVIHKVTQKPHHERFSSLDSLASSSSGVSSTTQNVSTTQETATEFGSFSSLGSNQSLITAQDVQQ 2316
            |.|    ..|..|..:..||:......:....:.:|.........||.:|.|.:    ..:.:..
Zfish   195 PGI----DNPAFEESTEEDSVHGLECALPRVKRPLSNPCIHLLRTGSSASSGWD----FVETLPL 251

  Fly  2317 IVEEAD---PPLKTPEAFIIVLQRENPESSIGITLAGGSDYEAKEITIHKILSNTPAAKDGRLKK 2378
            ..||..   |.|...|...|.:.|.||.|.:||::.||::.....:.|.::..:...|:||||..
Zfish   252 SAEEGCVKLPSLPEGEITTIEVHRTNPYSEMGISIVGGNETPLINVVIQEVYRDGVIARDGRLLA 316

  Fly  2379 GDRILAVNGMSMRGLTHRESISVLKTPRPEVVLVVTRSESLVVKALTKKRSSLGSLSSLNEKPTE 2443
            ||:||.||.:.:..:.|..:.|.|..|...:.|.|.|......:......|..||.:|:      
Zfish   317 GDQILQVNNVDISNVPHNFARSTLARPCATLQLTVLRERRCSARPPAATASPKGSPASI------ 375

  Fly  2444 LDYERKRNYHKASRSLDLDLDLV--SNEAG-------ESPVATTPSTGSV-SPPQPASLHDEDAE 2498
                 :...||...|..|.:.||  ::|||       |..:|.  ..|.: |..:..::::.|..
Zfish   376 -----RITLHKRESSEQLGIKLVRRTDEAGVFILDLLEGGLAA--KDGRLCSNDRVLAVNEHDLR 433

  Fly  2499 ATIAGIRARRQLSRGDAAKL--STSELLERAAEARNAIAAEIRAQAE----DAAASGGGARCVEI 2557
            .....:.|:...:.|:...|  |.|.....|....:.:..:|.:...    .:.|:......:.:
Zfish   434 HGTPELAAQIIQASGERVNLLISRSSKQTMAVHTGSTLTRDIWSHDHIPPLPSTATPSPVPSLHL 498

  Fly  2558 VKDS----------C-------------GLGFSIEGGFDSPLGNRPLIVKKVFMGGAAQKTNQVR 2599
            .:.|          |             .||.::.||..|..|..|:.|..|...|...:..:::
Zfish   499 ARSSTQRDLSQCVNCKEKHITVKKEPHESLGMTVAGGRGSKSGELPIFVTSVQPHGCLSRDGRIK 563

  Fly  2600 NGDEILSINGASTSRMTRVDAWNYMK 2625
            .||.:|||||...:.::..:|...:|
Zfish   564 RGDVLLSINGQDLTYLSHSEAVGTLK 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bbgNP_648705.2 PDZ_canonical 90..177 CDD:467153
PHA03247 <341..617 CDD:223021
PTZ00341 <926..1237 CDD:173534
PDZ6_PDZD2-PDZ3_hPro-IL-16-like 2330..2415 CDD:467243 27/84 (32%)
PDZ7_PDZD2-PDZ4_hPro-IL-16-like 2552..2636 CDD:467244 21/97 (22%)
lnx2aNP_001106696.2 COG5222 <44..201 CDD:227547 28/139 (20%)
mRING-HC-C3HC3D_LNX2 44..88 CDD:319694 3/10 (30%)
PDZ1_LNX1_2-like 266..354 CDD:467165 28/87 (32%)
PDZ2_LNX1_2-like 375..457 CDD:467166 17/94 (18%)
PDZ3_LNX1_2-like 516..603 CDD:467167 19/74 (26%)
PDZ4_LNX1_2-like 646..734 CDD:467168
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.