DRSC/TRiP Functional Genomics Resources

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Protein Alignment bbg and Pdzd3

DIOPT Version :9

Sequence 1:NP_001246755.1 Gene:bbg / 39583 FlyBaseID:FBgn0087007 Length:2637 Species:Drosophila melanogaster
Sequence 2:NP_573489.2 Gene:Pdzd3 / 170761 MGIID:2429554 Length:498 Species:Mus musculus


Alignment Length:334 Identity:84/334 - (25%)
Similarity:123/334 - (36%) Gaps:69/334 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly  2305 NQSLITAQDVQQIVEEADP-PLKTPEAFIIVLQRENPESSIGITL---AGGSDYEAKEITIHKIL 2365
            |..|..|:|..|    :|| .|..|. |.::.:.|  |.:.|..|   .|.:|:     .:.::.
Mouse    27 NPVLSLAEDQDQ----SDPWNLHRPR-FCLLSKEE--EKTFGFHLQQHLGKADH-----VVCRVD 79

  Fly  2366 SNTPAAKDGRLKKGDRILAVNGMSMRGLTHRESISVLKTPRPEVVLVVTRSESLVVKALTKKRSS 2430
            ..|.|.:.| |::||||||||...:....|...:..::...|.|:|.|     |........|..
Mouse    80 PGTSAQRQG-LREGDRILAVNNNIVAHEDHAVVVRYIRASGPRVLLTV-----LAQHVHDVARVL 138

  Fly  2431 LGSLSSLNEKPTELDYERKRNYHKASRSLDLDLDLVSNEAG---------ESPVATTPSTGSVS- 2485
            .||.:.|  .||.....|.|..|           :|.:|.|         ..|.....|.|..: 
Mouse   139 QGSDAFL--CPTLPSGVRPRLCH-----------VVKDEGGFGFSVTHGSRGPFWLVLSAGGAAE 190

  Fly  2486 ----PPQPASLHDEDAEATIAGIR--ARRQLSR-----GDAAKLSTSELLERAAEARNAIAAEIR 2539
                ||....|     |...|.:.  ...||:|     ||...|..:.|  ...|..:.:...:.
Mouse   191 RAGVPPGARLL-----EVNGASVEKLTYNQLNRKLWQSGDQVTLLVAGL--EVEEQCHQLGMPLA 248

  Fly  2540 AQAEDAAASGGGARCVEIVKDSCGLGFSI--EGGFDSPLGNRPLIVKKVFMGGAAQKTNQVRNGD 2602
            |...:..|.....||:.|.|...|.||.:  |.|.|..||.   .:..|..|..|.|.. ::.||
Mouse   249 APLAEGWALPAKPRCLNIEKGPEGFGFLLREEKGLDGRLGQ---FLWDVDPGLPADKAG-MKAGD 309

  Fly  2603 EILSINGAS 2611
            .::::.|.|
Mouse   310 RLVAVAGES 318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bbgNP_001246755.1 PDZ_signaling 90..177 CDD:238492
ATP-synt_B <1084..>1109 CDD:304375
PDZ_signaling 2331..2413 CDD:238492 23/84 (27%)
PDZ_signaling 2553..2634 CDD:238492 20/61 (33%)
Pdzd3NP_573489.2 PDZ_signaling 47..127 CDD:238492 25/93 (27%)
PDZ_signaling 155..232 CDD:238492 19/92 (21%)
PDZ 260..345 CDD:214570 20/63 (32%)
PDZ_signaling 407..471 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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