DRSC/TRiP Functional Genomics Resources

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Protein Alignment bbg and USH1C

DIOPT Version :9

Sequence 1:NP_001246755.1 Gene:bbg / 39583 FlyBaseID:FBgn0087007 Length:2637 Species:Drosophila melanogaster
Sequence 2:XP_016872564.1 Gene:USH1C / 10083 HGNCID:12597 Length:956 Species:Homo sapiens


Alignment Length:846 Identity:167/846 - (19%)
Similarity:305/846 - (36%) Gaps:222/846 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   920 TGEEQLVTSANSKSSSARFKKISSNDNLLDLGDEQDMQEQPLT-----ATITQESSLRERLECPQ 979
            |.||.:......|:.|.:.:.|    .|:.:....|   :|||     ..:::...:|..|..|.
Human   146 THEEVINLIRTKKTVSIKVRHI----GLIPVKSSPD---EPLTWQYVDQFVSESGGVRGSLGSPG 203

  Fly   980 DNQSIDRGTL--TLSERGKQLS------EKEGL-TTYTECETSEKESYLE-GQQVLNGKG-GFVS 1033
            :.::.::...  .:..||...|      :|.|: .::.:..:...|..|| |.|::...| .|.:
Human   204 NRENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSN 268

  Fly  1034 QDENSDQPTYEREVSETLTIVNDGEKQV----TKKLEQNKEIAGKKGAKLLKKTDEERRLEQEAQ 1094
            .|........:...|.|::||....:::    .::|.:.::...::...|::|     ||..|:.
Human   269 LDHKEAVNVLKSSRSLTISIVAAAGRELFMTDRERLAEARQRELQRQELLMQK-----RLAMESN 328

  Fly  1095 KLIESYQKVKKEAEKLYKLELADDDQGFDLSAFEQAEEEDKPEVSEEIKEVKDSQPVKVDIQIEE 1159
            |:::..|:::::..|....:.|::::.:.....:..|||:|  ..::.:|         |...:|
Human   329 KILQEQQEMERQRRKEIAQKAAEENERYRKEMEQIVEEEEK--FKKQWEE---------DWGSKE 382

  Fly  1160 EVKTPNQVIGEV-------------------KVEDVNKEIKETVQVSQQEIKKEVKVSHQETKET 1205
            ::..|..:..||                   |...:.|:.|:         ||:.|..   :.:.
Human   383 QLLLPKTITAEVHPVPLRKPKSFGWFYRYDGKFPTIRKKGKD---------KKKAKYG---SLQD 435

  Fly  1206 FKSEEKDESNELKIVKEEVKVTHQDLREQIQEIEAVKVVHKEVKVIKESAKVTTTTSHKQATKEV 1270
            .:..:|:...|.|:.||:.::..::.:.:|..: |.:|...|.:.::||.|:.........|:..
Human   436 LRKNKKELEFEQKLYKEKEEMLEKEKQLKINRL-AQEVSETEREDLEESEKIQYWVERLCQTRLE 499

  Fly  1271 IISKEDHKNDSAL--PAVSTTKVEIISPPLEDDLGYVLHKH-----------IIFPQEKVKTAPT 1322
            .||..|::.....  |......|..::|||....| .||.|           ..:|.:    .|:
Human   500 QISSADNEISEMTTGPPPPPPSVSPLAPPLRRFAG-GLHLHTTDLDDIPLDMFYYPPK----TPS 559

  Fly  1323 PLPKPKPKPPVPTNKP-KMPVNLTKPKS-------------APPPVPSKRSELSGSGGKPTPTQR 1373
            .|| ..|.|| |:|.| |:|.....|.|             .|||:|.          .|.|:..
Human   560 ALP-VMPHPP-PSNPPHKVPAPPVLPLSGHVSASSSPWVQRTPPPIPI----------PPPPSVP 612

  Fly  1374 RGSLETAQP-PKPLERI--------------IVGVEQRDEPEKP--QPIINLASVDLPNVAPNSK 1421
            ...|...:| |..||..              :...|.::...||  .|:...:....|.....|.
Human   613 TQDLTPTRPLPSALEEALSNHPFRTGDTGNPVEDWEAKNHSGKPTNSPVPEQSFPPTPKTFCPSP 677

  Fly  1422 Q-------ATVETTPVVEMPPDEL---QFESHQLPDDGEKEKDLHQ-----------ESNDLLS- 1464
            |       :|:....:|...|:.:   ..:|..||.:..|...::|           |..|..| 
Human   678 QPPRGPGVSTISKPVMVHQEPNFIYRPAVKSEVLPQEMLKRMVVYQTAFRQDFRKYEEGFDPYSM 742

  Fly  1465 -------------------GSSSSSVTTPITTPI---LVSATSSMDSVQSVIEVVNG---MPIIS 1504
                               ||...::...:.:||   :|||.....:.:....:|.|   |.|..
Human   743 FTPEQIMGKDVRLLRIKKEGSLDLALEGGVDSPIGKVVVSAVYERGAAERHGGIVKGDEIMAING 807

  Fly  1505 NQQTD-----------------DDDIDEVAA------YDDGM-HLEAEGTKDVRPVQEVTTLTLD 1545
            ...||                 .|.||.|.|      |||.: .|.:...:..:||::   |..|
Human   808 KIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDELASLPSSVAESPQPVRK---LLED 869

  Fly  1546 REHESDLGTLSNHHSNISSISGINASSNIPAA-------TLISSSIKKTSTEAATTKPAAPQI-P 1602
            |......|.|......::..:|..|.. :|||       ||.:.|:   ......|:.|.|:: |
Human   870 RAAVHRHGFLLQLEPTVNRQAGHRALC-VPAACSGHLLPTLSAGSL---DWRLEGTQGAIPEVLP 930

  Fly  1603 G 1603
            |
Human   931 G 931

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bbgNP_001246755.1 PDZ_signaling 90..177 CDD:238492
ATP-synt_B <1084..>1109 CDD:304375 5/24 (21%)
PDZ_signaling 2331..2413 CDD:238492
PDZ_signaling 2553..2634 CDD:238492
USH1CXP_016872564.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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