DRSC/TRiP Functional Genomics Resources

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Protein Alignment nuf and rab11fip4a

DIOPT Version :9

Sequence 1:NP_001246751.1 Gene:nuf / 39572 FlyBaseID:FBgn0013718 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_001002533.2 Gene:rab11fip4a / 436806 ZFINID:ZDB-GENE-040718-266 Length:621 Species:Danio rerio


Alignment Length:540 Identity:125/540 - (23%)
Similarity:227/540 - (42%) Gaps:113/540 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 IGAQQNRKLSTDSLEDLNLSFNTSASQNPLSNAYSLG------------VTGGAGSDYCGFGKHP 105
            :|.:..::...||..|......:|...........||            |:..|.|         
Zfish   138 MGGRDMQESDMDSAADSGAGSESSEGGRQDDKEEGLGGFFLRGNNCGQMVSSAAAS--------- 193

  Fly   106 PILIDQETFLSLNPADFEDIVPSNSEP------NSLVFIENKLETNNNSLESNNNHINNNNNNKI 164
             ::..:|.|......:..|..||:..|      |....:.:.|.::.........|:.|:....:
Zfish   194 -VISVEEQFEDYGEGEDVDFTPSSPIPDDDTRTNGFSDLGSSLPSSAGQTPQKIRHLYNSELLDV 257

  Fly   165 YNLENLTSKFNNKTNNTNTNGFKLENLK-NFKNKLLCD-------FEDTNSGGGGGGGSGGSGPV 221
            |     .|:...|.|..|....:|:||| |..|:.:..       |..:|.....|...      
Zfish   258 Y-----CSQCCKKVNLLNDLEARLKNLKANSPNRKISSTAFGRQLFHHSNFSSSQGSTE------ 311

  Fly   222 GMMNGALSAEICD-NLNEQLELLQRKVDDLSDTQNIAEDRTTRTKTEYAVLQARYHMLEEQYRES 285
            .:...::.:  || ::.|::..|::|:.:|.:......|..::.|.|...|..|.|.||||.::.
Zfish   312 DLFRDSIDS--CDVDITEKVSYLEKKISELENDSLANGDLKSKLKQENTQLVHRVHELEEQIKDQ 374

  Fly   286 ELRAEERLAEEQKRHREILARVEREAS------------LQNENCQMKIRATEIEATALREEAAR 338
            |.|||:.|.||.|||||..:::||:.|            |:.||.:||:....:::...:.:..:
Zfish   375 ETRAEQCLEEELKRHREAYSKMERDKSTEIELLSNRVQQLEEENAEMKVNVCRLKSQTEKLDQEK 439

  Fly   339 LRVLCDKQANDLHRTEEQLELARDQIGVLQQEHEEQAQALRRHE--QEKKSTEELMLELGRELQ- 400
            .| :.||..:...|.:::::|.|..:..|.|         .|||  :|:::.:||:.:|.|||: 
Zfish   440 QR-MTDKLEDTSLRLKDEMDLYRKMMDKLWQ---------NRHEFQKEREAMQELIEDLRRELEH 494

  Fly   401 ------------RAREESGARAMPTTSPESIRLEELHQELEEMRQKNRTLEEQNEELQATMLTNQ 453
                        |.|..:|.......:.|.    ||..|::.::|:|..|.:||::|       .
Zfish   495 LQLFKLETEKPGRGRTAAGLSEYNAKTREI----ELEHEVKRLKQENHKLRDQNDDL-------N 548

  Fly   454 ATMLTNGVEQGRHLL--NGTLNSLAQELEEMSQAQDSVDSATLASLSQLQQAFQEKEDENVRLKH 516
            ..:|:..:.:.::|.  :....|||.|::.             ||..:|..|.:|:|:.|.||:.
Zfish   549 GQILSLSLYEAKNLFACHTKAQSLAAEIDN-------------ASRDELVDALKEQEEINFRLRQ 600

  Fly   517 YIDTILLNIVENYPQLLEVK 536
            |:|.|:|.|:::.|.:||:|
Zfish   601 YMDKIILAILDHNPSILEIK 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nufNP_001246751.1 VirB5_like 436..>506 CDD:295212 14/71 (20%)
RBD-FIP 496..536 CDD:255374 16/39 (41%)
rab11fip4aNP_001002533.2 EFh 18..76 CDD:298682
EF-hand_7 19..76 CDD:290234
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 132..172 5/33 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..243 6/39 (15%)
DUF4201 348..497 CDD:290581 48/158 (30%)
BAR 355..539 CDD:299863 55/197 (28%)
RBD-FIP 580..620 CDD:255374 16/39 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170580391
Domainoid 1 1.000 97 1.000 Domainoid score I7171
eggNOG 1 0.900 - - E1_KOG0982
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1419449at2759
OrthoFinder 1 1.000 - - FOG0002087
OrthoInspector 1 1.000 - - otm25927
orthoMCL 1 0.900 - - OOG6_107919
Panther 1 1.100 - - O PTHR15726
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4084
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1211.780

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