DRSC/TRiP Functional Genomics Resources

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Protein Alignment nuf and Rab11fip4

DIOPT Version :10

Sequence 1:NP_001246751.1 Gene:nuf / 39572 FlyBaseID:FBgn0013718 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_780752.1 Gene:Rab11fip4 / 268451 MGIID:2442920 Length:635 Species:Mus musculus


Alignment Length:539 Identity:134/539 - (24%)
Similarity:230/539 - (42%) Gaps:122/539 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 EDLNLSFNTSASQNPLSNAYSLGVTGGAGSDYCGFGKHP-------------------------- 105
            ::|::.....:||.|..:     |.|      ||..|.|                          
Mouse   149 QELDMDSPMESSQGPEGS-----VKG------CGEEKEPELGGLFLPEDKCLVLTPSVTTSDLST 202

  Fly   106 ----PILIDQETFLSLNPADFEDIVPSNSEPNSLVFIENKLETNNNSLESNNNHINNN------N 160
                .::.::|.|......|..|..||:..|:.        ||..|......:.::::      .
Mouse   203 HSTASLISNEEQFEDYGEGDDVDCAPSSPCPDD--------ETRTNVYSDLGSSVSSSAGQTPRK 259

  Fly   161 NNKIYNLENL---TSKFNNKTNNTNTNGFKLENLK-NFKNKLLCDFEDTNSGGGGGGGSGGSGPV 221
            ....||.|.|   .|:...|.|..|....:|:||| |..|:.:       |....|.....:...
Mouse   260 MRHAYNSELLDVYCSQCCKKINLLNDLEARLKNLKANSPNRKI-------SSTAFGRQLMHNSNF 317

  Fly   222 GMMNGAL------SAEICDN-LNEQLELLQRKVDDLSDTQNIAEDRTTRTKTEYAVLQARYHMLE 279
            ...||:.      |.:.||| :.|::..|::||.:|.:....:....::.|.|...|..|.|.||
Mouse   318 SSSNGSTEDLFRDSIDSCDNDITEKVSFLEKKVTELENDSLTSGGLKSKLKQENMQLVHRVHELE 382

  Fly   280 EQYRESELRAEERLAEEQKRHREILARVEREASLQNENCQMKIRATEIEATALREEAARLRVLCD 344
            |..::.|..||:.|.||.:||||:..::|||.|.:.|....:::..|.|.|.||...|||:...:
Mouse   383 EMVKDQETTAEQALEEEARRHREVYCKLEREKSTELELLNTRVQQLEEENTDLRTTVARLKSQTE 447

  Fly   345 KQANDLHRTEEQLE----LARDQIGVLQQEHEEQAQALRRHEQEKKSTEELMLELGRELQ----- 400
            |...:..|..::||    ..:|::.:.::..::..|.....::|:::|:||:.:|.|||:     
Mouse   448 KLDEERQRMSDRLEDTSLRLKDEMDLYKRMMDKLRQNRLEFQKEREATQELIEDLRRELEHLQMY 512

  Fly   401 --------RAREESG-----ARAMPTTSPESIRLEELHQELEEMRQKNRTLEEQNEELQATMLTN 452
                    |.|..||     |||         |..||..|::.::|:|..|.:||::|...:|:.
Mouse   513 KLDCERPGRGRSSSGLGEFNARA---------REVELEHEVKRLKQENHKLRDQNDDLNGQILSL 568

  Fly   453 QATMLTNGVEQGRHLLNGTLNSLAQELEEMSQAQDSVDSATLASLSQLQQAFQEKEDENVRLKHY 517
            .              |....|..|.:.:..|.|.: :|:   ||..:|.:|.:|:|:.|.||:.|
Mouse   569 S--------------LYEAKNLFATQTKAQSLAAE-IDT---ASRDELMEALKEQEEINFRLRQY 615

  Fly   518 IDTILLNIVENYPQLLEVK 536
            :|.|:|.|:::.|.:||:|
Mouse   616 MDKIILAILDHNPSILEIK 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nufNP_001246751.1 COG4913 <238..>405 CDD:443941 52/183 (28%)
VirB5_like 436..>506 CDD:445702 15/69 (22%)
RBD-FIP 496..536 CDD:462805 16/39 (41%)
Rab11fip4NP_780752.1 EF-hand_7 20..78 CDD:463900
Necessary for interaction with RAB11A, subcellular location, homo-or heterooligomerization. /evidence=ECO:0000250 82..635 134/539 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 147..176 9/37 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 216..258 8/49 (16%)
SMC_prok_B <337..619 CDD:274008 86/308 (28%)
RBD-FIP 594..634 CDD:462805 16/39 (41%)
Blue background indicates that the domain is not in the aligned region.

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