DRSC/TRiP Functional Genomics Resources

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Protein Alignment nuf and rab11fip4b

DIOPT Version :9

Sequence 1:NP_001246751.1 Gene:nuf / 39572 FlyBaseID:FBgn0013718 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_001122297.1 Gene:rab11fip4b / 100151129 ZFINID:ZDB-GENE-080722-8 Length:502 Species:Danio rerio


Alignment Length:548 Identity:132/548 - (24%)
Similarity:234/548 - (42%) Gaps:128/548 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 QQNRKLSTDSLEDLNLSFNTSASQNPLSNAYSLGVTGGAGSDYCGFG----------KHPPILID 110
            ::.|.:..||..|           :.:.:|..:...|..|....|.|          .|....|.
Zfish    15 EEGRGVERDSDRD-----------SAVDSASEISDGGRTGEKEEGIGICLPREKGDLMHNHFEIS 68

  Fly   111 QETFL---SLNPADFEDIVP------SNSEPNSLVFIENKLETNN-NSLESNNNHINNNNNNKIY 165
            .::.|   |||...|||...      :.|.|..    ::::..|. :.|.|:.:........||:
Zfish    69 DQSALSSASLNEEQFEDYGEGEDGDCTTSSPCP----DDEIRINGCSDLGSSVSSSAGQTPRKIH 129

  Fly   166 NLE--------------NLTSKFNNKTNNTNTNGFKLENLK----NFKNKLLCDFEDTNSGGGGG 212
            |::              :|.|...|:..|..|:.   .|.|    .|..|||.:...::|.|   
Zfish   130 NVDDQMEVFCSQCCKRVSLLSDLENRLKNLKTSS---PNRKISSTAFGRKLLHNSNISSSNG--- 188

  Fly   213 GGSGGSGPVGMMNGALSAEICDNLNEQLELLQRKVDDLSDTQNIAEDRTTRTKTEYAVLQARYHM 277
                  ....:.:.:..:...| :.|::..|.:||.:|.:...::.|..|:.|.|...|..|.|.
Zfish   189 ------STEDLFHDSTDSSDLD-ITEKVSYLDKKVTELENEILMSGDVKTKLKQENIQLVHRIHE 246

  Fly   278 LEEQYRESELRAEERLAEEQKRHREILARVEREAS------------LQNENCQMKIRATEIEAT 330
            ||||.::.|.|||:.:.:|.:|||:...|:|::.:            |::||.:|.:....:::.
Zfish   247 LEEQLKDQETRAEKIMEDELRRHRDAYIRLEKDKNTQIELLRNRLHQLEDENGKMAMNMNRLKSQ 311

  Fly   331 A--LREEAARLRVLCDKQANDLHRTEEQLELARDQIGVLQQEHEEQAQALRRHEQEKKSTEELML 393
            .  |.||..|   :.||..:...|.:::::|.:..:..|:|..:|       .::|:.:.:||:.
Zfish   312 TEKLDEEKQR---MTDKLEDTSLRLKDEMDLYKKMMDKLRQNRQE-------FQRERDTMQELIE 366

  Fly   394 ELGRELQR--------AREESGARAMPTTSPESIRL--EELHQELEEMRQKNRTLEEQNEELQAT 448
            :|.|||:.        .|...|.|:..:.|..|.|.  .||.||:..::|.|:.|.||||:    
Zfish   367 DLRRELEHLQLYKLEAERAGRGRRSSISLSEYSSRTRESELEQEVRRLKQDNQKLREQNED---- 427

  Fly   449 MLTNQATMLTNGVEQGRHLLNGTLNSLA-QELEEMSQAQDSVDSATL----ASLSQLQQAFQEKE 508
                               |||.|.||: .|.:.:...|....|..:    ||..||.:|.:::|
Zfish   428 -------------------LNGQLLSLSLHEAKNLFATQTKAQSLAMEIDHASRDQLLEALKQQE 473

  Fly   509 DENVRLKHYIDTILLNIVENYPQLLEVK 536
            :.|:||:.|:|.|:|:|:::.|.:||:|
Zfish   474 EINLRLRQYMDKIILSILDHNPSILEIK 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nufNP_001246751.1 VirB5_like 436..>506 CDD:295212 19/74 (26%)
RBD-FIP 496..536 CDD:255374 16/39 (41%)
rab11fip4bNP_001122297.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..49 7/44 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 71..98 7/26 (27%)
PRKG1_interact 340..428 CDD:292521 27/117 (23%)
RBD-FIP 461..501 CDD:255374 16/39 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170580393
Domainoid 1 1.000 97 1.000 Domainoid score I7171
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 123 1.000 Inparanoid score I4707
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1419449at2759
OrthoFinder 1 1.000 - - FOG0002087
OrthoInspector 1 1.000 - - otm25927
orthoMCL 1 0.900 - - OOG6_107919
Panther 1 1.100 - - O PTHR15726
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.900

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