DRSC/TRiP Functional Genomics Resources

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Protein Alignment nan and Trpv1

DIOPT Version :9

Sequence 1:NP_001261833.1 Gene:nan / 39571 FlyBaseID:FBgn0036414 Length:834 Species:Drosophila melanogaster
Sequence 2:NP_114188.1 Gene:Trpv1 / 83810 RGDID:628841 Length:838 Species:Rattus norvegicus


Alignment Length:832 Identity:203/832 - (24%)
Similarity:321/832 - (38%) Gaps:267/832 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 YNKGAGRYFPI----SKLVLLRNRDRP---RTRQLPEIRALENPD---DDFNIHD-----YCPE- 112
            |.:|.....||    |.|.:.|..|.|   |......:.|.|.|.   |..:|.|     .|.| 
  Rat    65 YEEGGLASCPIITVSSVLTIQRPGDGPASVRPSSQDSVSAGEKPPRLYDRRSIFDAVAQSNCQEL 129

  Fly   113 -------------VSEAEYISNPTAYRFVCWDLNMRGAVGETILHLCLLN-------ASSLHADL 157
                         ::::|:....|               |:|.|...:||       ..:|..|:
  Rat   130 ESLLPFLQRSKKRLTDSEFKDPET---------------GKTCLLKAMLNLHNGQNDTIALLLDV 179

  Fly   158 AKRLLKFYPKLILDIYMSDEYY-GESVLHIAIVNEDPAMVKYLLDANADVQERCCGAFMSAEDTK 221
            |::....  |..::...:|.|| |::.|||||...:..:|..|::..||||....|.|       
  Rat   180 ARKTDSL--KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF------- 235

  Fly   222 FSRTDSPDHEYVALCPMTNYDGYVYWGEYPLSFAACLSQEECFRLVLARG---ADPDFQDTNGNT 283
            |.:|             ....|: |:||.|||.|||.:|....:.:|...   ||...:|:.|||
  Rat   236 FKKT-------------KGRPGF-YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT 286

  Fly   284 VLHMLV---------------IYEKIEMFDVGYEVGTNIH-------IKNIQNLTPLTLAAKLGR 326
            |||.||               :|.:|.:      :|..:|       |.|.:.||||.|||..|:
  Rat   287 VLHALVEVADNTVDNTKFVTSMYNEILI------LGAKLHPTLKLEEITNRKGLTPLALAASSGK 345

  Fly   327 VEMFFHVMSIEREIY-------------WQLGSITCAAYPLLMIDTINEETGNINKDSVLNFVVF 378
            :.:..::  ::|||:             |..|.:..:.|.|..|||       ..|:|||..:.:
  Rat   346 IGVLAYI--LQREIHEPECRHLSRKFTEWAYGPVHSSLYDLSCIDT-------CEKNSVLEVIAY 401

  Fly   379 GDK---LEHLELLDGVVIDLLKTKWDTFCKSRFYKQFYMFALYFLISLFSFILRPGPDAKDEDED 440
            ...   ..|..||...:..||:.|||.|.|..||..|:::.||.:|                   
  Rat   402 SSSETPNRHDMLLVEPLNRLLQDKWDRFVKRIFYFNFFVYCLYMII------------------- 447

  Fly   441 GANSTTAKSDLYRQNGSDSYHLHSKRATMTTEYKTFWLNFT--EYYDPSEVEVLPAWWESYAQCP 503
                                                   ||  .||.|  ||.||.:       .
  Rat   448 ---------------------------------------FTAAAYYRP--VEGLPPY-------K 464

  Fly   504 LMNLESDLAKLRIMAELLNFVGAILYLLVALREARFLGLKMFIEN-------LMTAPSRVMFLFS 561
            |.|...|.  .|:..|:|:..|.:.:.        |.|::.|::.       .:.:.|.::|...
  Rat   465 LKNTVGDY--FRVTGEILSVSGGVYFF--------FRGIQYFLQRRPSLKSLFVDSYSEILFFVQ 519

  Fly   562 CALMMTIPWLRVSCLTEIDDHVTVVIMLTTAPY--FLFFCRGFKTVGPFVVMIYRMVMGDLLRFV 624
            ...|:....|..|   :..::|..::......:  .|::.|||:.:|.:.|||.:|::.||.||:
  Rat   520 SLFMLVSVVLYFS---QRKEYVASMVFSLAMGWTNMLYYTRGFQQMGIYAVMIEKMILRDLCRFM 581

  Fly   625 SIYLVFVMGFSQAFYIIFLTFDNPSSPEDQDAESNPMPSPMESIVAMFLMSLTNFGDYYGAMVST 689
            .:||||:.|||.|...:.           :|.::|.:  ||||.......|....|:.|.::.||
  Rat   582 FVYLVFLFGFSTAVVTLI-----------EDGKNNSL--PMESTPHKCRGSACKPGNSYNSLYST 633

  Fly   690 ----------------QHEYEAKILFFL----FMVIVSVLLVNMLIAMMGNTYQKIA-EIRNEWQ 733
                            ...|:.|.:|.:    ::::..:||:|||||:||.|..||| |.:|.|:
  Rat   634 CLELFKFTIGMGDLEFTENYDFKAVFIILLLAYVILTYILLLNMLIALMGETVNKIAQESKNIWK 698

  Fly   734 RQWARIVLVVERSVPPAERLKNFMQYSQSMSDGRRALVLRLNMTEEEKEEMK 785
            .|.|..:|..|:|.....| |.|          |...:|::..|.:.|::.:
  Rat   699 LQRAITILDTEKSFLKCMR-KAF----------RSGKLLQVGFTPDGKDDYR 739

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
nanNP_001261833.1 Ank_2 <131..209 CDD:289560 24/85 (28%)
ANK <131..200 CDD:238125 19/76 (25%)
ANK repeat 138..174 CDD:293786 9/42 (21%)
ANK 178..329 CDD:238125 55/176 (31%)
ANK repeat 179..229 CDD:293786 17/50 (34%)
Ank_2 184..311 CDD:289560 43/151 (28%)
ANK repeat 231..278 CDD:293786 14/49 (29%)
ANK repeat 280..311 CDD:293786 13/52 (25%)
Ion_trans 519..727 CDD:278921 60/237 (25%)
Trpv1NP_114188.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..63
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 86..109 6/22 (27%)
TRPV1 109..760 CDD:411980 190/788 (24%)
ANK 1 110..152 6/41 (15%)
ANK 2 153..199 11/62 (18%)
ANK repeat 154..196 CDD:293786 9/43 (21%)
ANK 3 200..246 17/66 (26%)
ANK repeat 201..231 CDD:293786 12/29 (41%)
ANK 4 247..282 12/34 (35%)
ANK repeat 247..281 CDD:293786 12/33 (36%)
ANK 5 283..331 13/53 (25%)
ANK repeat 283..320 CDD:293786 11/42 (26%)
ANK 6 332..358 10/27 (37%)