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Protein Alignment nan and Trpv1

DIOPT Version :9

Sequence 1:	NP_001261833.1	Gene:	nan / 39571	FlyBaseID:	FBgn0036414	Length:	834	Species:	Drosophila melanogaster
Sequence 2:	NP_001001445.1	Gene:	Trpv1 / 193034	MGIID:	1341787	Length:	839	Species:	Mus musculus

Alignment Length:	818	Identity:	204/818 - (24%)
Similarity:	322/818 - (39%)	Gaps:	238/818 - (29%)

- Green bases have known domain annotations that are detailed below.

  Fly    64 YNKGAGRYFPI----SKLVLLRNRDRP----RTRQLPEIRALENPD---DDFNIHD-----YCPE 112
            |.:|.....||    |.:.|.|:.|.|    :|.|......:|.|.   |..:|.|     .|.|
Mouse    65 YEEGGLASCPIITVSSVVTLQRSVDGPTCLRQTSQDSVSTGVETPPRLYDRRSIFDAVAQSNCQE 129

  Fly   113 VSEAEYISNPTAYRFVCWDLNMRG-AVGETILHLCLLN-------ASSLHADLAKRLLKFYPKLI 169
            :.........:..|..  |...:. ..|:|.|...:||       ..:|..|:|::....  |..
Mouse   130 LESLLSFLQKSKKRLT--DSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDIARKTDSL--KQF 190

  Fly   170 LDIYMSDEYY-GESVLHIAIVNEDPAMVKYLLDANADVQERCCGAFMSAEDTKFSRTDSPDHEYV 233
            ::...:|.|| |::.|||||...:.|:|..|::..||||....|.|       |.:|
Mouse   191 VNASYTDSYYKGQTALHIAIERRNMALVTLLVENGADVQAAANGDF-------FKKT-------- 240

  Fly   234 ALCPMTNYDGYVYWGEYPLSFAACLSQEECFRLVLARG---ADPDFQDTNGNTVLHMLV------ 289
                 ....|: |:||.|||.|||.:|....:.:|...   ||...:|:.||||||.||
Mouse   241 -----KGRPGF-YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNT 299

  Fly   290 ---------IYEKIEMFDVGYEVGTNIH-------IKNIQNLTPLTLAAKLGRVEMFFHVMSIER 338
                     :|.:|.:      :|..:|       :.|.:.||||.|||..|::.:..::  ::|
Mouse   300 ADNTKFVTNMYNEILI------LGAKLHPTLKLEELTNKKGLTPLALAASSGKIGVLAYI--LQR 356

  Fly   339 EIY-------------WQLGSITCAAYPLLMIDTINEETGNINKDSVLNFVVFGDK---LEHLEL 387
            ||:             |..|.:..:.|.|..|||       ..|:|||..:.:...   ..|..|
Mouse   357 EIHEPECRHLSRKFTEWAYGPVHSSLYDLSCIDT-------CEKNSVLEVIAYSSSETPNRHDML 414

  Fly   388 LDGVVIDLLKTKWDTFCKSRFYKQFYMFALYFLISLFSFILRPGPDAKDEDEDGANSTTAKSDLY 452
            |...:..||:.|||.|.|..||..|:::.||.:|                      .|||
Mouse   415 LVEPLNRLLQDKWDRFVKRIFYFNFFVYCLYMII----------------------FTTA----- 452

  Fly   453 RQNGSDSYHLHSKRATMTTEYKTFWLNFTEYYDPSEVEVLPAWWESYAQCPLMNLESDLAKLRIM 517
                                         .||.|  ||.||.:       .|.|...|.  .|:.
Mouse   453 -----------------------------AYYRP--VEGLPPY-------KLNNTVGDY--FRVT 477

  Fly   518 AELLNFVGAILYLLVALREARFLGLKMFIEN-------LMTAPSRVMFLFSCALMMTIPWLRVSC 575
            .|:|:..|.:.:.        |.|::.|::.       .:.:.|.::|......|:....|..|.
Mouse   478 GEILSVSGGVYFF--------FRGIQYFLQRRPSLKSLFVDSYSEILFFVQSLFMLVSVVLYFSH 534

  Fly   576 LTEIDDHVTVVIMLTTAPY--FLFFCRGFKTVGPFVVMIYRMVMGDLLRFVSIYLVFVMGFSQAF 638
            ..|   :|..::......:  .|::.|||:.:|.:.|||.:|::.||.||:.:||||:.|||.|.
Mouse   535 RKE---YVASMVFSLAMGWTNMLYYTRGFQQMGIYAVMIEKMILRDLCRFMFVYLVFLFGFSTAV 596

  Fly   639 YIIFLTFDNPSSPEDQDAESNPMPSPMESIVAMFLMSLTNFGDYYGAMVST-------------- 689
            ..:.           :|.::|.:  |:||.......|....|:.|.::.||
Mouse   597 VTLI-----------EDGKNNSL--PVESPPHKCRGSACRPGNSYNSLYSTCLELFKFTIGMGDL 648

  Fly   690 --QHEYEAKILFFL----FMVIVSVLLVNMLIAMMGNTYQKIA-EIRNEWQRQWARIVLVVERSV 747
              ...|:.|.:|.:    ::::..:||:|||||:||.|..||| |.:|.|:.|.|..:|..|:|.
Mouse   649 EFTENYDFKAVFIILLLAYVILTYILLLNMLIALMGETVNKIAQESKNIWKLQRAITILDTEKSF 713

  Fly   748 PPAERLKNFMQYSQSMSDGRRALVLRLNMTEEEKEEMK 785
            ....| |.|          |...:|::..|.:.|::.:
Mouse   714 LKCMR-KAF----------RSGKLLQVGFTPDGKDDFR 740

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.