DRSC/TRiP Functional Genomics Resources

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Protein Alignment nan and trpv4l.2

DIOPT Version :10

Sequence 1:NP_001261833.1 Gene:nan / 39571 FlyBaseID:FBgn0036414 Length:834 Species:Drosophila melanogaster
Sequence 2:XP_012820642.2 Gene:trpv4l.2 / 100494502 XenbaseID:XB-GENE-22066247 Length:806 Species:Xenopus tropicalis


Alignment Length:710 Identity:165/710 - (23%)
Similarity:265/710 - (37%) Gaps:233/710 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 GETILHLCLLNASSLHADLAKRLLKFYPKL-----ILDIYMSDEYY-GESVLHIAIVNEDPAMVK 197
            |:|.|...|:|......|....|:....|.     .:::..:|:|| |::.|||||.......|:
 Frog   125 GKTCLSKALMNLKDGKNDTIPVLIDIAEKTGNLQEFINLPFTDKYYNGQTALHIAIERRCKHYVE 189

  Fly   198 YLLDANADVQERCCGAFMSAEDTKFSRTDSPDHEYVALCPMTNYDGYVYWGEYPLSFAACLSQEE 262
            .|:...|||..:..|.|...:|.                     .||.|:||.|||.|||.:|.:
 Frog   190 LLVQKGADVHAQAKGCFFQPKDE---------------------GGYFYFGELPLSLAACTNQSD 233

  Fly   263 CFRLVLARG---ADPDFQDTNGNTVLHMLV----------------------------------- 289
            ....:....   ||...||:.||||||.||                                   
 Frog   234 IVEYLTENAHNKADLCRQDSRGNTVLHALVAIADNSPENTIFVTEMYNHLVIKCAKLCAKRSLNG 298

  Fly   290 ------------IYEKIEMFDVGYEVGTNIHIKNIQNLTPLTLAAKLGRVEMFFHVMSIE----- 337
                        |.||.|...:.       .:.|.:|::||.:|||||::.:|.|:|.:|     
 Frog   299 IPPLMMATKPGKIEEKQETLSLE-------AVLNKENMSPLMMAAKLGKIGIFQHIMQLEMKDEE 356

  Fly   338 --------REIYWQLGSITCAAYPLLMIDTINEETGNINKDSVLNFVVFGD--KLEHLELLDGVV 392
                    |:  |..|.:..:.|.|.|:            ||||..:|:..  |..|..|....:
 Frog   357 ALHLSRKFRD--WNYGPVYSSLYDLSML------------DSVLEILVYKSTAKNRHEMLAVEPI 407

  Fly   393 IDLLKTKWDTFCKSRFYKQFYMFALYFLISLFSFILRPGPDAKDEDEDGANSTTAKSDLYRQNGS 457
            .:||..||..|....||..|..:.:..:|.......||                       ..|:
 Frog   408 NELLSDKWKKFGAVSFYLSFIAYLIMMIIFTLIAYYRP-----------------------MKGT 449

  Fly   458 DSYHLHSKRATMTTEYKTFWLNFTEYYDPSEVEVLPAWWESYAQCPLMNLESDLAKLRIMAELLN 522
            ..|...:     ||::                                               |.
 Frog   450 PPYPYRT-----TTDH-----------------------------------------------LR 462

  Fly   523 FVGAILYLLVALREARFLGLKMFIENLMT------APSRVMFLFSCALMMTIPWLRVSCLTE--- 578
            .||.|:.||.        |:..||.|:..      ..:..:|...|..::.|.:..:..:|.   
 Frog   463 LVGEIIILLT--------GIVFFISNMKNLFMKKYPGANSLFTDGCFQLLYIIYSVLVIITATLY 519

  Fly   579 ---IDDHVTVVIMLTTAPYF--LFFCRGFKTVGPFVVMIYRMVMGDLLRFVSIYLVFVMGFSQAF 638
               |:.::.|:::.....:.  |:|.||.|..|.:.:|:.:::..||.||:.:||:|::||:.|.
 Frog   520 LAGIEAYLAVMVIALVLGWINALYFTRGLKLTGMYSIMLQKILFKDLFRFLLVYLLFMVGFASAL 584

  Fly   639 YIIFLTFDNPSSPED--QDAESN----PMPSPMES------IVAMFLMSLTNFGDYYGAMVSTQH 691
            ..:.    ||.:.|:  .|.:.|    ..||...|      ::.:|.::: ..||.  .|:| ..
 Frog   585 VSLL----NPCTNEEICNDGQENCTVPENPSCQHSTTFSKLLLDLFTLAI-GMGDL--EMIS-HA 641

  Fly   692 EYEAK--ILFFLFMVIVSVLLVNMLIAMMGNTYQKIA-EIRNEWQRQWARIVLVVERSVP 748
            :|.|.  ||...:::|..:||:|||||:||.|..::: |.:..||.|||..:|.:|..:|
 Frog   642 KYPAVFIILLVTYLIITFILLLNMLIALMGGTVGEVSKESKQIWQLQWATTILDIENYLP 701

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nanNP_001261833.1 TRPV 131..748 CDD:454755 164/708 (23%)
ANK repeat 138..174 CDD:293786 8/39 (21%)
ANK repeat 179..229 CDD:293786 15/50 (30%)
ANK repeat 231..278 CDD:293786 14/49 (29%)
ANK repeat 280..311 CDD:293786 12/77 (16%)
trpv4l.2XP_012820642.2 TRPV 50..763 CDD:454755 165/710 (23%)
ANK repeat 124..167 CDD:293786 8/41 (20%)
ANK repeat 171..202 CDD:293786 11/30 (37%)
ANK repeat 218..252 CDD:293786 11/33 (33%)
ANK repeat 254..293 CDD:293786 8/38 (21%)

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