DRSC/TRiP Functional Genomics Resources

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Protein Alignment D and Sox11

DIOPT Version :10

Sequence 1:NP_524066.1 Gene:D / 39570 FlyBaseID:FBgn0000411 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_445801.1 Gene:Sox11 / 84046 RGDID:69351 Length:395 Species:Rattus norvegicus


Alignment Length:325 Identity:103/325 - (31%)
Similarity:137/325 - (42%) Gaps:108/325 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   140 GHIKRPMNAFMVWSRLQRRQIAKDNPKMHNSEISKRLGAEWKLLAESEKRPFIDEAKRLRALHMK 204
            ||||||||||||||:::||:|.:.:|.|||:|||||||..||:|.:|||.|||.||:|||..||.
  Rat    47 GHIKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKHMA 111

  Fly   205 EHPDYKYRPRRKPKNPLTAGPQGGLQMQAGGMGQQKLGAGPG------------AGAG-GYNP-- 254
            ::||||||||:|||....|.|..|........| .|...|||            |||| ...|  
  Rat   112 DYPDYKYRPRKKPKTDPAAKPSAGQSPDKSAAG-AKAAKGPGKKCAKLKAPAGKAGAGKAAQPGD 175

  Fly   255 ------------------------------------------FHQLPPYFAPSHHLDQGYPVPYF 277
                                                      .|.|||   |:    |..|....
  Rat   176 CGAGKAAKCVFLDDDDEEDDEDDELQLRPKPDADDDDDEPAHSHLLPP---PA----QQQPPQLL 233

  Fly   278 GGFDPLALSKLHQSQAAAAAAVNNQG----------------------QQQGQAPPQLPPTS--- 317
            ..:   :::|:..|...::||.:.:|                      ||...|||.|.|.|   
  Rat   234 RRY---SVAKVPASPTLSSAAESPEGASLYDEVRAGGRLYYSFKNITKQQPPPAPPALSPASSRC 295

  Fly   318 -LSSFYSGIYSGISAP---------SLYAAHSANAAGLYPSSSTSSPGSSPGTITPNGMDGSMDS 372
             .:|..||..||..|.         ||..:..|::|...|..:     .:.|.::.:.:|..:||
  Rat   296 VSTSSSSGSSSGSGAEDADDLMFDLSLNFSQGAHSACEQPLGA-----GAAGNLSLSLVDKDLDS 355

  Fly   373  372
              Rat   356  355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DNP_524066.1 HMG-box_SoxB 140..219 CDD:438790 54/78 (69%)
Sox11NP_445801.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22
HMG-box_SoxC_SOX11 38..129 CDD:438846 55/81 (68%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 114..258 36/154 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 276..312 14/35 (40%)
Required for transcriptional activation activity and synergistic coactivation of transcriptional activity with POU3F2. /evidence=ECO:0000250|UniProtKB:Q7M6Y2 363..395
Blue background indicates that the domain is not in the aligned region.

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