DRSC/TRiP Functional Genomics Resources

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Protein Alignment D and SOX18

DIOPT Version :9

Sequence 1:NP_001261830.1 Gene:D / 39570 FlyBaseID:FBgn0000411 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_060889.1 Gene:SOX18 / 54345 HGNCID:11194 Length:384 Species:Homo sapiens


Alignment Length:254 Identity:88/254 - (34%)
Similarity:124/254 - (48%) Gaps:45/254 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 EGHIKRPMNAFMVWSRLQRRQIAKDNPKMHNSEISKRLGAEWKLLAESEKRPFIDEAKRLRALHM 203
            |..|:|||||||||::.:|:::|:.||.:||:.:||.||..||.|..:|||||::||:|||..|:
Human    82 ESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPFVEEAERLRVQHL 146

  Fly   204 KEHPDYKYRPRRKPKNPLTAGPQGGLQMQAGGMGQQKLGAGP-GAGAGGYNPFHQLPPYFAPSHH 267
            ::||:||||||||.:.......:.||.:.  |:...:....| .|.:|....|.:|||..|....
Human   147 RDHPNYKYRPRRKKQARKARRLEPGLLLP--GLAPPQPPPEPFPAASGSARAFRELPPLGAEFDG 209

  Fly   268 LDQGYPVPYFGGFDPLALSKLHQSQAAAAAAVNNQGQQQGQA----PPQLP-------------P 315
            |  |.|.|.....|                     |.:.|:|    ||..|             |
Human   210 L--GLPTPERSPLD---------------------GLEPGEAAFFPPPAAPEDCALRPFRAPYAP 251

  Fly   316 TSLSSFYSGIYSGISAPSLYAA-HSANAAGLYPSSSTSSPGSSPGTITPNGMDGSMDSA 373
            |.||....|.|....|.:|..| .:|..|||| ..:..:||..||.::|......::||
Human   252 TELSRDPGGCYGAPLAEALRTAPPAAPLAGLY-YGTLGTPGPYPGPLSPPPEAPPLESA 309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DNP_001261830.1 SOX-TCF_HMG-box 141..212 CDD:238684 38/70 (54%)
SOX18NP_060889.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..88 2/5 (40%)
SOX-TCF_HMG-box 84..155 CDD:238684 38/70 (54%)
Interaction with DNA. /evidence=ECO:0000250|UniProtKB:P43680 87..100 9/12 (75%)
Interaction with DNA. /evidence=ECO:0000250|UniProtKB:P43680 111..123 6/11 (55%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 146..218 25/75 (33%)
Important for transcriptional activation. /evidence=ECO:0000250|UniProtKB:P43680 166..231 19/89 (21%)
Sox_C_TAD 193..382 CDD:288887 37/141 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 293..312 5/17 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10270
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R685
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
54.940

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