Sequence 1: | NP_001261830.1 | Gene: | D / 39570 | FlyBaseID: | FBgn0000411 | Length: | 382 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_988849.1 | Gene: | sox17b.1 / 394440 | XenbaseID: | XB-GENE-484865 | Length: | 376 | Species: | Xenopus tropicalis |
Alignment Length: | 291 | Identity: | 88/291 - (30%) |
---|---|---|---|
Similarity: | 130/291 - (44%) | Gaps: | 68/291 - (23%) |
- Green bases have known domain annotations that are detailed below.
Fly 133 ATSPGQ-EGHIKRPMNAFMVWSRLQRRQIAKDNPKMHNSEISKRLGAEWKLLAESEKRPFIDEAK 196
Fly 197 RLRALHMKEHPDYKYRPRRK--------------PKNPLTAGPQ---------GGLQMQAGGMGQ 238
Fly 239 QKLGAGPGAGAGGYNPF-HQLPPYFAPSHHLDQGYPV----PYFGGFDPLAL----SKLHQSQAA 294
Fly 295 AAAAVNNQ--------------GQQQGQAPPQLPPTSLSSFYSGIYSGISAPSLYAAHSANAAGL 345
Fly 346 YPSSSTSSPGSSPGTIT----PNGMDGSMDS 372 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
D | NP_001261830.1 | SOX-TCF_HMG-box | 141..212 | CDD:238684 | 38/70 (54%) |
sox17b.1 | NP_988849.1 | SOX-TCF_HMG-box | 57..128 | CDD:238684 | 38/70 (54%) |
PABP-1234 | <80..250 | CDD:130689 | 55/170 (32%) | ||
Required for transcriptional activity and interaction with ctnnb1. /evidence=ECO:0000250|UniProtKB:O42601 | 327..331 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0000028 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR10270 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R685 |
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 4.040 |