Protein Alignment D and sox4a

DIOPT Version :10

• Sequence 1: NP_524066.1
• Gene: D / 39570
• FlyBaseID: FBgn0000411
• Length: 382
• Species: Drosophila melanogaster
• Sequence 2: NP_998287.1
• Gene: sox4a / 336346
• ZFINID: ZDB-GENE-030131-8290
• Length: 363
• Species: Danio rerio
• Alignment Length: 323
• Identity: 99/323 - (30%)
• Similarity: 148/323 - (45%)
• Gaps: 86/323 - (26%)

  Fly    84 HQAVSAQQTLSPNSSIGSAGSLGSQSSLGSNGS---GLNSSSGHQSAGMHSLATSPGQEGHIKRP 145
            |.:.|:...:.|..||.|     .:..|..:.|   |..:|:|.:.    .:|......||||||
Zfish    12 HTSSSSSSDVLPGDSIDS-----GEMDLDMDASPTPGSPNSAGDKM----DIAWCKTPSGHIKRP 67

  Fly   146 MNAFMVWSRLQRRQIAKDNPKMHNSEISKRLGAEWKLLAESEKRPFIDEAKRLRALHMKEHPDYK 210
            ||||||||:::||:|.:.:|.|||:|||||||..||||.:|:|.|||.||:|||..||.::||||
Zfish    68 MNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERLRLKHMADYPDYK 132

  Fly   211 YRPRRKPKNPLTAGPQGGLQMQAGGMGQ--QKLGAGPGAGAGG------YNPFH------QLPPY 261
            ||||:|.|:            .:|..|:  :::.|.|||.:..      .:..|      :|..:
Zfish   133 YRPRKKVKS------------SSGKTGEKAERVSASPGAKSASKKSSKTLSRTHRKSTTLELTSH 185

  Fly   262 FAPSHHLDQGYPVPYFGGFDPLALSKLHQSQAAAAAAVNNQGQQQGQAPPQLP--PTSLSSFYSG 324
            ..|:.|                  ..|::|::.:||             .|:|  |......|.|
Zfish   186 SVPADH------------------HALYKSRSVSAA-------------KQIPEKPAKRGHVYGG 219

  Fly   325 IYSGISAPSLYAAHSANAAGLYPSSSTSSPGSSPGTITPNGMDGSMDSA--------LRRPVP 379
            ..:..|.||:       |....|:.|:|:..|.|.::..:|:....:.|        .|.|.|
Zfish   220 CSTDSSPPSV-------AVPASPTLSSSAESSDPLSLYEDGLASGKEDAEPAARFKYTRAPSP 275

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
D	NP_524066.1	HMG-box_SoxB	140..219	CDD:438790	53/78 (68%)
sox4a	NP_998287.1	HMG-box_SoxC	63..138	CDD:438838	51/74 (69%)