DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment D and SOX8

DIOPT Version :9

Sequence 1:NP_001261830.1 Gene:D / 39570 FlyBaseID:FBgn0000411 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_055402.2 Gene:SOX8 / 30812 HGNCID:11203 Length:446 Species:Homo sapiens


Alignment Length:443 Identity:117/443 - (26%)
Similarity:155/443 - (34%) Gaps:152/443 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 GGSPNGPAGQGVNGSSGMGHHMSSHMTPHHMHQAVSAQQTLSPNSSIGSAGSLGSQSSLGSNGSG 117
            |....|.||..|.|:.|.....:....|..:..|||  |.|.     |...||......|..|..
Human    38 GSEGLGRAGVAVGGARGDPAEAADERFPACIRDAVS--QVLK-----GYDWSLVPMPVRGGGGGA 95

  Fly   118 LNSSSGHQSAGMHSLATSPGQEGHIKRPMNAFMVWSRLQRRQIAKDNPKMHNSEISKRLGAEWKL 182
            |.:                  :.|:||||||||||::..||::|...|.:||:|:||.||..|:|
Human    96 LKA------------------KPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRL 142

  Fly   183 LAESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKPKNPLTAG-------------PQGGLQMQA- 233
            |:|||||||::||:|||..|.|:||||||:|||  :....||             |.||...:| 
Human   143 LSESEKRPFVEEAERLRVQHKKDHPDYKYQPRR--RKSAKAGHSDSDSGAELGPHPGGGAVYKAE 205

  Fly   234 GGMGQ-------------------------QKLGAGPGAGAGGYNP------------------- 254
            .|:|.                         |:.||.|.....|..|                   
Human   206 AGLGDGHHHGDHTGQTHGPPTPPTTPKTELQQAGAKPELKLEGRRPVDSGRQNIDFSNVDISELS 270

  Fly   255 -----------FHQLPPYFAPSHHLDQGYPVP------YFGGFDPLALSKL--HQSQAAAAAAVN 300
                       .|:...|      |..|.|.|      |.|.:.....|.:  |:|..:|:|:..
Human   271 SEVMGTMDAFDVHEFDQY------LPLGGPAPPEPGQAYGGAYFHAGASPVWAHKSAPSASASPT 329

  Fly   301 NQG-----------------------------QQQGQAPPQLPPTSLSSFYSGIYSGISAPSLYA 336
            ..|                             ..|..|.|..|....:. ..|.|..:.|.|.|.
Human   330 ETGPPRPHIKTEQPSPGHYGDQPRGSPDYGSCSGQSSATPAAPAGPFAG-SQGDYGDLQASSYYG 393

  Fly   337 AHSANAAGLYPSSSTSSPGSSPGTITPNGM------------DGSMDSALRRP 377
            |:...|.|||......||.....:...||:            |..:.:.|.||
Human   394 AYPGYAPGLYQYPCFHSPRRPYASPLLNGLALPPAHSPTSHWDQPVYTTLTRP 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DNP_001261830.1 SOX-TCF_HMG-box 141..212 CDD:238684 44/70 (63%)
SOX8NP_055402.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..58 7/19 (37%)
Sox_N 18..89 CDD:315171 16/57 (28%)
Dimerization (DIM). /evidence=ECO:0000303|PubMed:31194875 58..100 12/66 (18%)
SOX-TCF_HMG-box 101..171 CDD:238684 43/69 (62%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 155..259 29/105 (28%)
Transactivation domain (TAM). /evidence=ECO:0000303|PubMed:31194875 224..298 12/79 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 318..378 9/59 (15%)
Transactivation domain (TAC). /evidence=ECO:0000303|PubMed:31194875 335..446 20/111 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 425..446 2/20 (10%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.810

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