Protein Alignment D and sox-3

DIOPT Version :10

• Sequence 1: NP_524066.1
• Gene: D / 39570
• FlyBaseID: FBgn0000411
• Length: 382
• Species: Drosophila melanogaster
• Sequence 2: NP_510439.1
• Gene: sox-3 / 185534
• WormBaseID: WBGene00004950
• Length: 212
• Species: Caenorhabditis elegans
• Alignment Length: 245
• Identity: 100/245 - (40%)
• Similarity: 119/245 - (48%)
• Gaps: 73/245 - (29%)

  Fly    90 QQTLSPNSSIGSAGS-LGSQSSLGSNGSGLNSSSGHQSAGMHSLATSPGQEGHIKRPMNAFMVWS 153
            :.|.|.:|.:...|| :..|:||                            .|:|||||||||||
 Worm    23 EDTTSVSSGLSPPGSPVDLQNSL----------------------------DHVKRPMNAFMVWS 59

  Fly   154 RLQRRQIAKDNPKMHNSEISKRLGAEWKLLAESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKPK 218
            |.|||::|:|||||||||||||||||||.|:|.||||||||||||||||||||||||||||||||
 Worm    60 RGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQEKRPFIDEAKRLRALHMKEHPDYKYRPRRKPK 124

  Fly   219 NP-LTAGPQGGLQMQAGGMGQQKLGAGPGAGAGGYNPFHQLPPY----------FAPSHHLDQGY 272
            :. |...|:..:.|..                        :||.          ...:|.|.|.|
 Worm   125 SSNLKQQPRLNIAMPT------------------------IPPQSLFNYSTAFDSLKTHDLSQYY 165

  Fly   273 ------PVPYFGGFDPLALSKLHQSQAAAAAAVNNQGQQQGQAPPQLPPT 316
                  ||.....:.|..:...:..||||.||.:   |......|..|.|
 Worm   166 SSFFQSPVLSGSTYAPYNMMAAYARQAAAVAAAS---QVSASTTPTAPAT 212

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
D	NP_524066.1	HMG-box_SoxB	140..219	CDD:438790	69/78 (88%)
sox-3	NP_510439.1	HMG-box_SoxB	46..125	CDD:438790	69/78 (88%)