DRSC/TRiP Functional Genomics Resources

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Protein Alignment D and sox10

DIOPT Version :10

Sequence 1:NP_524066.1 Gene:D / 39570 FlyBaseID:FBgn0000411 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_571950.1 Gene:sox10 / 140616 ZFINID:ZDB-GENE-011207-1 Length:485 Species:Danio rerio


Alignment Length:510 Identity:124/510 - (24%)
Similarity:185/510 - (36%) Gaps:192/510 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 SQLQLSPGMDMDIKRVLHYSQSLAAMGGSPNG-----PA-----------GQGVNGSSGMGHHMS 75
            |::::|||:..|     .:|.|.....|:|.|     |.           |.||:|...:.....
Zfish     9 SEVEMSPGVSDD-----GHSMSPGHSSGAPGGADSPLPGQQSQMSGIGDDGAGVSGGVSVKSDEE 68

  Fly    76 SHMTPHHMHQAVSAQQTLSPNSSIGSAGSLGSQSSLGSNGSGLNSSSGHQSAGMHSLATSPGQEG 140
            ....|..:.:|||  |.|:           |...:|......:||.|          .:.|    
Zfish    69 DDRFPIGIREAVS--QVLN-----------GYDWTLVPMPVRVNSGS----------KSKP---- 106

  Fly   141 HIKRPMNAFMVWSRLQRRQIAKDNPKMHNSEISKRLGAEWKLLAESEKRPFIDEAKRLRALHMKE 205
            |:||||||||||::..||::|...|.:||:|:||.||..|:||.|::|||||:||:|||..|.|:
Zfish   107 HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNETDKRPFIEEAERLRKQHKKD 171

  Fly   206 HPDYKYRPRRK------------------------------------------------------ 216
            :|:|||:|||:                                                      
Zfish   172 YPEYKYQPRRRKNGKPGSSSEADAHSEGEVSHSQSHYKSLHLEVAHGGAAGSPLGDGHHPHATGQ 236

  Fly   217 ---PKNPLTAGPQGGLQMQAGGMGQQKLGA---GPGAGAGG------------------------ 251
               |..|.|. |:..||....|.|:::.||   |.|.||.|                        
Zfish   237 SHSPPTPPTT-PKTELQGGKSGEGKREGGASRSGLGVGADGSSASSSASGKPHIDFGNVDIGEIS 300

  Fly   252 ------YNPF--HQLPPYFAPSHH------LDQGYPVP--YFGGFDPLALSKLHQSQAAAAAAVN 300
                  ..||  ::...|..|:.|      ...|...|  .:|....||.:..|.:...:...:.
Zfish   301 HDVMANMEPFDVNEFDQYLPPNGHPQASATASAGSAAPSYTYGISSALAAASGHSTAWLSKQQLP 365

  Fly   301 NQ-------GQQQGQAPPQLP-------------PTSLSSFYSGI-----------YSGISAPSL 334
            :|       |:.|.::....|             |.:|..:.|..           |:...|...
Zfish   366 SQQHLGADGGKTQIKSETHFPGDTAASGSHVTYTPLTLPHYSSAFPSLASRAQFAEYAEHQASGS 430

  Fly   335 YAAHSANAAGLY-------PS-----SSTSSPGSSPGTITPNGMDGSMDSALRRP 377
            |.|||:..:|||       ||     ::...|||.|.:.:|...:..:.:.|.||
Zfish   431 YYAHSSQTSGLYSAFSYMGPSQRPLYTAIPDPGSVPQSHSPTHWEQPVYTTLSRP 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DNP_524066.1 HMG-box_SoxB 140..219 CDD:438790 46/135 (34%)
sox10NP_571950.1 Sox_N 13..97 CDD:463586 22/101 (22%)
HMG-box_SoxE 107..181 CDD:438840 43/73 (59%)

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