DRSC/TRiP Functional Genomics Resources

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Protein Alignment D and sox6

DIOPT Version :10

Sequence 1:NP_524066.1 Gene:D / 39570 FlyBaseID:FBgn0000411 Length:382 Species:Drosophila melanogaster
Sequence 2:XP_031755685.1 Gene:sox6 / 100144640 XenbaseID:XB-GENE-483934 Length:804 Species:Xenopus tropicalis


Alignment Length:229 Identity:66/229 - (28%)
Similarity:101/229 - (44%) Gaps:60/229 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 SLAAMGGSPN---GPA---GQGVNGSSGMGHH---MSSHMTPHHMHQAVSAQQTLSPNSSIGS-- 101
            ||:...|.|:   ||:   ...:|..:..|..   |.:......|.:.:..:|.|:|:|..|.  
 Frog   443 SLSNKSGIPSPIRGPSLDILSSLNSPALFGDQDTVMKAIQEARKMREQIQREQLLTPHSIDGKLP 507

  Fly   102 -------------------AGSLGSQS---------SLGSNGSGLNSSSGHQSAGMHSLATSPGQ 138
                               .|.:..:|         :||...:|..:..|....|:..|......
 Frog   508 INNMGLNNCRSDKMLLDAVTGKICIRSAHTERTHFENLGPQLTGKPNEDGKLGPGVIDLTRPEDV 572

  Fly   139 EG---------------------HIKRPMNAFMVWSRLQRRQIAKDNPKMHNSEISKRLGAEWKL 182
            ||                     ||||||||||||::.:||:|.:..|.||||.|||.||:.||.
 Frog   573 EGGATVVEARVYRDTRGRSSSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKA 637

  Fly   183 LAESEKRPFIDEAKRLRALHMKEHPDYKYRPRRK 216
            ::..||:|:.:|..||..:|::::|:|||:||.|
 Frog   638 MSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPK 671

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DNP_524066.1 HMG-box_SoxB 140..219 CDD:438790 42/98 (43%)
sox6XP_031755685.1 HMG-box_EGL13-like 595..672 CDD:438848 41/77 (53%)

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