DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sox21b and ROX1

DIOPT Version :9

Sequence 1:NP_001261829.1 Gene:Sox21b / 39569 FlyBaseID:FBgn0042630 Length:587 Species:Drosophila melanogaster
Sequence 2:NP_015390.1 Gene:ROX1 / 856178 SGDID:S000006269 Length:368 Species:Saccharomyces cerevisiae


Alignment Length:342 Identity:76/342 - (22%)
Similarity:114/342 - (33%) Gaps:101/342 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   248 IKRPMNAFMVWSRLQRRKI-----AQDNPKMHNSEISKRLGAEWKLLTEEEKRPFIDEAKRLRAM 307
            |.||.|||:::.:...|.:     ||.....|||.|||.:|.:||.|..|:|..:.:.|::.:..
Yeast    10 IPRPKNAFILFRQHYHRILIDEWTAQGVEIPHNSNISKIIGTKWKGLQPEDKAHWENLAEKEKLE 74

  Fly   308 HMKEHPDYKYRPRRKPK--------------------ALRRDGYP-YPMPYPSVPVEALRA-GIT 350
            |.:::|:|||:|.||.|                    ..::...| ...|:.:..|...|| .::
Yeast    75 HERKYPEYKYKPVRKSKKKQLLLKEIEQQQQQQQKEQQQQKQSQPQLQQPFNNNIVLMKRAHSLS 139

  Fly   351 PGYFAPGPTAAAYHLGSHLGQTSTPTTTQA------TLSG---QMDKFALERSSYLSNSSQASAY 406
            |........:..:.|.:.|.:...|:...:      :|||   ..||.|.:.....|..:....|
Yeast   140 PSSSVSSSNSYQFQLNNDLKRLPIPSVNTSNYMVSRSLSGLPLTHDKTARDLPQLSSQLNSIPYY 204

  Fly   407 SAYLDPSVLTKAYFDSKMYQDRAANYAFDISKIYGAQQHAAAHHQQQQQQQQQQQQQQQQL---- 467
            ||..|||                                 ..||.....|.|.:.....||    
Yeast   205 SAPHDPS---------------------------------TRHHYLNVAQAQPRANSTPQLPFIS 236

  Fly   468 ---------------------LLSGGGGSGGGGSASSHNNNSSSGLDDRDATPQLEAVESKPHLH 511
                                 ..|.|..|....|:...||..:|..:.....|       .|.|.
Yeast   237 SIINNSSQTPVTTTTTSTTTATSSPGKFSSSPNSSVLENNRLNSINNSNQYLP-------PPLLP 294

  Fly   512 SPSDVGLDYAQYAQQYG 528
            |..|..||..|..:|.|
Yeast   295 SLQDFQLDQYQQLKQMG 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21bNP_001261829.1 SOX-TCF_HMG-box 247..318 CDD:238684 26/74 (35%)
ROX1NP_015390.1 MATA_HMG-box 9..88 CDD:238685 28/77 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S1275
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R685
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.790

Return to query results.
Submit another query.