DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox21b and SOX3

DIOPT Version :9

Sequence 1:NP_001261829.1 Gene:Sox21b / 39569 FlyBaseID:FBgn0042630 Length:587 Species:Drosophila melanogaster
Sequence 2:NP_005625.2 Gene:SOX3 / 6658 HGNCID:11199 Length:446 Species:Homo sapiens


Alignment Length:539 Identity:153/539 - (28%)
Similarity:200/539 - (37%) Gaps:183/539 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 HHPCSSNSSNGSPNGSTGL--------GLHPHSALHLAH------HHSQLHQH--HPAGQQQQHS 134
            |.|.||     :|..|.||        |. |.....|||      .:|.|...  :|.|...|.:
Human    37 HRPPSS-----APTESQGLFTVAAPAPGA-PSPPATLAHLLPAPAMYSLLETELKNPVGTPTQAA 95

  Fly   135 QP--PVSSSSTSHHSQSQALSHQTHSNGSSQLGGGSASGAGSVAGGAANSHHSAPASSSVMAAAA 197
            ..  |.:.......|.:.|        |.:..||||:.||....||.                  
Human    96 GTGGPAAPGGAGKSSANAA--------GGANSGGGSSGGASGGGGGT------------------ 134

  Fly   198 AAHLHHNSQASPISNLHQNMGSLMNSGSSASDVFFSLMIQNTTKRQNEEHIKRPMNAFMVWSRLQ 262
                                                          :::.:||||||||||||.|
Human   135 ----------------------------------------------DQDRVKRPMNAFMVWSRGQ 153

  Fly   263 RRKIAQDNPKMHNSEISKRLGAEWKLLTEEEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKA-L 326
            |||:|.:|||||||||||||||:|||||:.||||||||||||||:||||:||||||||||.|. |
Human   154 RRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAVHMKEYPDYKYRPRRKTKTLL 218

  Fly   327 RRDGYPYPMPYPSVPVEALRAGITPGYFAPGPTAAAYHLGSHLGQTSTPT------TTQATLSGQ 385
            ::|.|..|            :|:.|    ||..|||....:.....|:|.      .|...::|.
Human   219 KKDKYSLP------------SGLLP----PGAAAAAAAAAAAAAAASSPVGVGQRLDTYTHVNGW 267

  Fly   386 MD---KFALERSSYLSNSSQASAYSAYLDPSVLTKAYFDSKMYQDRAANYAFDISKIYGAQQHAA 447
            .:   ....|:..|    :|..:.|:...|..|...             :.:|::.:        
Human   268 ANGAYSLVQEQLGY----AQPPSMSSPPPPPALPPM-------------HRYDMAGL-------- 307

  Fly   448 AHHQQQQQQQQQQQQQQQQLLLSGGGGSGGGGSASSHNNNSSSGLDDRDAT-------------- 498
                |.........|....:..:....||.||.|.|....:::....:.||              
Human   308 ----QYSPMMPPGAQSYMNVAAAAAAASGYGGMAPSATAAAAAAYGQQPATAAAAAAAAAAMSLG 368

  Fly   499 PQLEAVESKPHLHSPSDVGLDYAQYA---------QQY---GGQLAAAAGGAVGGGAAGAAGGSA 551
            |....|:|:|  .||......::|.|         ..|   ||..|.||....||...|......
Human   369 PMGSVVKSEP--SSPPPAIASHSQRACLGDLRDMISMYLPPGGDAADAASPLPGGRLHGVHQHYQ 431

  Fly   552 GGGSGGATAADFRRPLTVI 570
            |.|    ||.:...|||.|
Human   432 GAG----TAVNGTVPLTHI 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21bNP_001261829.1 SOX-TCF_HMG-box 247..318 CDD:238684 59/70 (84%)
SOX3NP_005625.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 29..48 5/15 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 87..140 15/124 (12%)
SOX-TCF_HMG-box 138..209 CDD:238684 59/70 (84%)
SOXp 208..302 CDD:289133 28/126 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10270
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
54.870

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