Protein Alignment Sox21b and SoxN

DIOPT Version :10

• Sequence 1: NP_001261829.1
• Gene: Sox21b / 39569
• FlyBaseID: FBgn0042630
• Length: 587
• Species: Drosophila melanogaster
• Sequence 2: NP_001260269.1
• Gene: SoxN / 44275
• FlyBaseID: FBgn0029123
• Length: 761
• Species: Drosophila melanogaster
• Alignment Length: 594
• Identity: 197/594 - (33%)
• Similarity: 243/594 - (40%)
• Gaps: 196/594 - (32%)

  Fly    31 HHLGQLAAAVHQQQQQQQQS---DQGLGHSHHLHGQQLSLNHQHHHPHQSPQHQQQHQHHPCSS- 91
            ||   .:||:|........:   ...||.||..| .||| :|.|||.|.|.........:|.||
  Fly    20 HH---TSAALHGHAASPYSALAPLMNLGQSHLTH-SQLS-HHNHHHHHMSAHIAASQSPNPLSSL 79

  Fly    92 -----NSSNGSPNGSTGLGLHPHSALHLAHHHSQLHQHHPAGQQQQHSQP--------PVSSSST 143
                 |:.|||..|                   |..|.    ||||.|.|        |..||..
  Fly    80 QSSMANTLNGSQVG-------------------QQQQQ----QQQQQSSPLHSSSELSPTQSSIG 121

  Fly   144 SHHSQSQALSHQTHS----NGSSQ-LGGGSASGAGSVAGGAANSHHSAPASSSVMAAAAAAHLHH 203
            |||..| .:|||.|:    :|..| ||.|||  ..|:.||::|
  Fly   122 SHHMTS-PVSHQQHTQQQQHGQQQHLGAGSA--LSSLTGGSSN---------------------- 161

  Fly   204 NSQASPISNLHQNMGSLMNSGSSASDVFFSLMIQNTTKRQNEEH---IKRPMNAFMVWSRLQRRK 265
                              |:.:||            |..:|::|   :||||||||||||.||||
  Fly   162 ------------------NNNNSA------------TANKNQQHADRVKRPMNAFMVWSRGQRRK 196

  Fly   266 IAQDNPKMHNSEISKRLGAEWKLLTEEEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKALRRDG 330
            :|.||||||||||||||||:||.|:|.||||||||||||||:|||||||||||||||.|.|.:..
  Fly   197 MASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLTKTK 261

  Fly   331 YPYPMPYPSVPVEALRAGITPGYFAPGPTAAAYHLGSHLGQTSTPTTTQA------TLSGQMDKF 389
            ..|||                |...||.|..    |...|:..|||..|.      :|:|.....
  Fly   262 EKYPM----------------GGLMPGQTVG----GGAPGEPVTPTRVQGQPGQNQSLNGSGGSA 306

  Fly   390 ALERSSYLSNSSQA---------------SAYSAYLDPSVLTKAYFDSKMYQDRAANYAFDISKI 439
            |...::..:.:.||               :.|..:.||:. ..||..|.|.|..||. .:|:..:
  Fly   307 AAAAAAAAAAAQQARQDMYQMNAPNGYMPNGYMMHADPAG-AAAYQTSYMGQHYAAQ-RYDMGHM 369

  Fly   440 Y-----------GAQQHAAAHHQQQQQQ------QQQQQQQQQQLLLSGGGGSGGGGSASSHNNN 487
            |           |.|........||...      ...|||........||||.||..|..||:.:
  Fly   370 YNNGYAMYQTVSGGQTSPYGSSLQQPGSPSPYGGSSLQQQPGSPTPYGGGGGGGGQVSCQSHSPS 434

  Fly   488 SSSGLDDRDATPQLEAVESKPHLHSPSDVGLDYAQ-------YAQQYGGQLAAAAGGAVGGGAAG 545
            .||             ::|:|...|||.:.|:...       ..::|....|||        ||.
  Fly   435 DSS-------------IKSEPVSPSPSAIALNNNNNINNNHIMKREYSSAAAAA--------AAA 478

  Fly   546 AAGGSAGGG 554
            ||..:||||
  Fly   479 AAAAAAGGG 487

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Sox21b	NP_001261829.1	HMG-box_SoxB	246..325	CDD:438790	67/81 (83%)
SoxN	NP_001260269.1	HMG-box_SoxB	177..252	CDD:438790	63/74 (85%)