DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox21b and sox3

DIOPT Version :10

Sequence 1:NP_001261829.1 Gene:Sox21b / 39569 FlyBaseID:FBgn0042630 Length:587 Species:Drosophila melanogaster
Sequence 2:NP_001001811.2 Gene:sox3 / 30529 ZFINID:ZDB-GENE-980526-333 Length:300 Species:Danio rerio


Alignment Length:244 Identity:105/244 - (43%)
Similarity:131/244 - (53%) Gaps:39/244 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   208 SPISNLHQNMGSLM-NSGSSASDVFFSLMIQNTTKRQNEEHIKRPMNAFMVWSRLQRRKIAQDNP 271
            |||.  ..|.||:. ...:||:|               ::.:||||||||||||.||||:||:||
Zfish    11 SPIP--QSNTGSVTGGKNNSAND---------------QDRVKRPMNAFMVWSRGQRRKMAQENP 58

  Fly   272 KMHNSEISKRLGAEWKLLTEEEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKA-LRRDGYPYPM 335
            |||||||||||||:|||||:.||||||||||||||||||||||||||||||.|. |::|.|..| 
Zfish    59 KMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDKYSLP- 122

  Fly   336 PYPSVPVEALRAGITPGYFAPGPTAA--AYHLGSHLGQTSTPTTTQATLSGQMDKFALERSSYLS 398
                           .|..|||..|.  |..:|..:..|.....|.:..|...|:.|..:...: 
Zfish   123 ---------------GGLLAPGANAVNNAVSVGQRMDYTHMNGWTNSAYSLMQDQLAYPQHPSM- 171

  Fly   399 NSSQASAYSAYLDPSVLTKAYFDSKMYQDRAANYAFDISKIYGAQQHAA 447
            ||.|......|....:.......::.|.:.|:.|: .:|..|..|..:|
Zfish   172 NSPQIQQMHRYDMAGLQYPMMSTAQTYMNAASTYS-SMSPAYTQQTSSA 219

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21bNP_001261829.1 HMG-box_SoxB 246..325 CDD:438790 68/78 (87%)
sox3NP_001001811.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..35 9/40 (23%)
HMG-box_SoxB 33..108 CDD:438790 65/74 (88%)
SOXp 104..182 CDD:463537 26/94 (28%)
9aaTAD. /evidence=ECO:0000250|UniProtKB:P41225 251..262
Blue background indicates that the domain is not in the aligned region.

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