DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox21b and Sox13

DIOPT Version :10

Sequence 1:NP_001261829.1 Gene:Sox21b / 39569 FlyBaseID:FBgn0042630 Length:587 Species:Drosophila melanogaster
Sequence 2:XP_063128147.1 Gene:Sox13 / 289026 RGDID:1309674 Length:657 Species:Rattus norvegicus


Alignment Length:403 Identity:109/403 - (27%)
Similarity:162/403 - (40%) Gaps:101/403 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 THHLGQ--LAAAVHQQQQQQ-----QQSDQGLGHSHHLHGQQLSLN------HQHHHPH-QSPQH 80
            |.|..|  :||.:.::||||     ||.:|.......|..||..:|      .|.:.|: ..|..
  Rat   205 TAHSEQKNMAAMLFEKQQQQMELARQQQEQIAKQQQQLIQQQHKINLLQQQIQQVNMPYVMIPAF 269

  Fly    81 QQQHQHHPCSSNSSNGSPNGSTGLGLHPHSALHLAHHHSQLHQ-------------HHPAGQQQQ 132
            ...||..|.       :|:....|.:.|.....:.:....||.             |||.     
  Rat   270 PSSHQPLPV-------TPDSQLALPIQPIPCKPVEYPLQLLHSPPAPVVKRPGVATHHPL----- 322

  Fly   133 HSQPPVSSSSTSHHSQSQALSHQTHSNGSSQLGGGSASGAGSVAGGAANSHHSAP---------- 187
             .:||...:.|:    ...:|...:::.|..|...|.....|..|.......|:|          
  Rat   323 -QEPPQPLNLTA----KPKVSELPNTSSSPSLKMNSCGPRPSSHGAPTRDLQSSPPNLPLGFLGE 382

  Fly   188 ---ASSSVMAAAAAAHLH----HNSQASPI-------------SNLHQNMGSLMNSGSSASDVFF 232
               .:.::..|....|.|    .||.::|.             ..|.:|....:.......||..
  Rat   383 GDAVTKAIQDARQLLHSHSGALENSPSAPFRKDLISLDSSPAKERLEENCVHPLEEAMLGCDVDG 447

  Fly   233 SLMIQNTTKRQNEEHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTEEEKRPF 297
            |   ::.::.:|..||||||||||||::.:||||.|..|.||||.|||.||:.||.:|.:||:|:
  Rat   448 S---RHFSESRNSSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPY 509

  Fly   298 IDEAKRLRAMHMKEHPDYKYRPRRKP--------------KAL---RRDG--YPYPMPYPSVPVE 343
            .:|..||...|::::|||||:||.|.              |||   ||.|  ..|     ::|.:
  Rat   510 YEEQARLSRQHLEKYPDYKYKPRPKRTCVVEGRRLRVGEYKALMRTRRQGARQSY-----AIPPQ 569

  Fly   344 ALRAGITPGYFAP 356
            |.:|.::.....|
  Rat   570 AGQAQVSSDILFP 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21bNP_001261829.1 HMG-box_SoxB 246..325 CDD:438790 45/92 (49%)
Sox13XP_063128147.1 None

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