DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox21b and Meiosin

DIOPT Version :10

Sequence 1:NP_001261829.1 Gene:Sox21b / 39569 FlyBaseID:FBgn0042630 Length:587 Species:Drosophila melanogaster
Sequence 2:NP_001357740.1 Gene:Meiosin / 243866 MGIID:3647482 Length:589 Species:Mus musculus


Alignment Length:361 Identity:63/361 - (17%)
Similarity:111/361 - (30%) Gaps:125/361 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 SSNGSPNGSTGLGLHPHSALHLAHHHSQLHQHHPAGQQQQHSQPPVSSSSTSHHSQSQALSHQTH 157
            :|..|||||.           ||...||::..|.|    .:....:..||:...|.|:.|.....
Mouse   273 TSEDSPNGSP-----------LALGSSQINTWHVA----DYLNEILGVSSSLFSSPSKILPDHVL 322

  Fly   158 SNGSSQLGGGSASGAGSVAGGAANSHHSAPASSSVMAAAAAAHLHHNSQAS---PISNLHQNMGS 219
            .:|:..|      ..|.:....|.....:|....|.:.......:..|..|   ...:|.:|:..
Mouse   323 EDGTYFL------TEGLLESSPATCEVESPQEKEVSSEGPTGPPNFQSSVSLDHCYLSLSENVKV 381

  Fly   220 LMNSGSSASDV----------------------FFSLMIQNTTKRQNEEHI-------------- 248
            |.|.|||:...                      .|||...:..::.|.|.:              
Mouse   382 LSNCGSSSESTDTESLWGQEEVRGVATYPRRTGVFSLAQPSVLQQANPEGLQTSSDEDRDYTWTP 446

  Fly   249 --------------------------------------KRPMNAFMVWSRLQRRKIAQDNPKMHN 275
                                                  |:.:|.|:::.|:.|::..:..|...:
Mouse   447 TGQSSGLPVASKKIKKVQASQGPVKPKDSRKACPGQVKKKCVNGFIMFCRMNRKQYIRACPGTAS 511

  Fly   276 SEISKRLGAEWKLLTEEEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKALRRDGYPYPMPYPSV 340
            :..:|.|...|:.:|.|||:|:..:|:|....:.:       ..:::..:...|....|.|:..:
Mouse   512 TAATKDLAQLWRGMTLEEKKPYCTKARRFSRQNNR-------IVKQENSSSEDDDGETPKPFYQL 569

  Fly   341 PVEALRAGITPGYFAPGPTAAAYHLGSHLGQTSTPT 376
            ..|..:..                    ||.||.||
Mouse   570 LAEKAQVS--------------------LGLTSLPT 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21bNP_001261829.1 HMG-box_SoxB 246..325 CDD:438790 17/130 (13%)
MeiosinNP_001357740.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..31
Basic motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU00981 14..27
bHLH_SF 24..73 CDD:469605
Helix-loop-helix motif. /evidence=ECO:0000255|PROSITE-ProRule:PRU00981 28..68
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 89..191
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 342..363 2/20 (10%)
NHP6B 416..>539 CDD:227935 20/122 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 422..457 2/34 (6%)
HMG-box_BHMG1 484..549 CDD:438793 16/71 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 544..566 2/28 (7%)
Blue background indicates that the domain is not in the aligned region.

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