DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox21b and Sox4

DIOPT Version :10

Sequence 1:NP_001261829.1 Gene:Sox21b / 39569 FlyBaseID:FBgn0042630 Length:587 Species:Drosophila melanogaster
Sequence 2:NP_033264.2 Gene:Sox4 / 20677 MGIID:98366 Length:440 Species:Mus musculus


Alignment Length:470 Identity:124/470 - (26%)
Similarity:181/470 - (38%) Gaps:141/470 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 QTHS--NGSSQLGGGSA-SGAGSVAGGAANSHHSAPASSSVMAAAAAAHLHHNSQASPISNLHQN 216
            ||::  |..:.|.|.|: ||||...|.|                         |..:|       
Mouse     4 QTNNAENTEALLAGESSDSGAGLELGIA-------------------------SSPTP------- 36

  Fly   217 MGSLMNSGSSASDVFFSLMIQNTTKRQNEEHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKR 281
             ||..::|..|.|..:.        :....|||||||||||||:::||||.:.:|.|||:|||||
Mouse    37 -GSTASTGGKADDPSWC--------KTPSGHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKR 92

  Fly   282 LGAEWKLLTEEEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKALRRDGYPYPMPYPSVPVEALR 346
            ||..||||.:.:|.|||.||:|||..||.::||||||||:|                   |::..
Mouse    93 LGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRPRKK-------------------VKSGN 138

  Fly   347 AGITPGYFA-PGPT----------AAAYHLGSHLGQTSTPTTTQ--------------------A 380
            ||......| ||..          |.:.|.|...|.:|.|...:                    |
Mouse   139 AGAGSAATAKPGEKGDKVAGSSGHAGSSHAGGGAGGSSKPAPKKSCGPKVAGSSVGKPHAKLVPA 203

  Fly   381 TLSGQMDKFALERSSYLSNSSQASAYSAYLDPSVLTKAYFDSKMYQDRAANYAFDISKIYGAQQH 445
            ..|.....|:.|:::.|......:.|.. ..||..|.|...|..            |.:....:|
Mouse   204 GGSKAAASFSPEQAALLPLGEPTAVYKV-RTPSAATPAASSSPS------------SALATPAKH 255

  Fly   446 AAAHHQQQQQQQQQQQQQQQQLLLSGGGGSGG---GGSASSHNNNSSSGL----------DDRDA 497
            .|             .::.:::.|.|..|:..   ||..:|.:.:...||          |.|..
Mouse   256 PA-------------DKKVKRVYLFGSLGASASPVGGLGASADPSDPLGLYEDGGPGCSPDGRSL 307

  Fly   498 TPQLEAVESKPHLHSPSDVGLDYAQYAQQYGGQLAAAAGGAVGGGAAGAAGGSAGGGSGGATAAD 562
            :.:..|..|.....||:|        .:.|....||:...:.....|.::..|:...|.|::::|
Mouse   308 SGRSSAASSPAASRSPAD--------HRGYASLRAASPAPSSAPSHASSSLSSSSSSSSGSSSSD 364

  Fly   563 FRRPLTVIFXPPSSN 577
            ......::. .||||
Mouse   365 DEFEDDLLDLNPSSN 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21bNP_001261829.1 HMG-box_SoxB 246..325 CDD:438790 52/78 (67%)
Sox4NP_033264.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..58 19/94 (20%)
HMG-box_SoxC 58..133 CDD:438838 51/74 (69%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 128..211 19/101 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 234..258 8/48 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 272..382 24/116 (21%)
9aaTAD. /evidence=ECO:0000250|UniProtKB:Q06945 392..400
Blue background indicates that the domain is not in the aligned region.

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