DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox21b and Sox12

DIOPT Version :9

Sequence 1:NP_001261829.1 Gene:Sox21b / 39569 FlyBaseID:FBgn0042630 Length:587 Species:Drosophila melanogaster
Sequence 2:NP_035568.1 Gene:Sox12 / 20667 MGIID:98360 Length:314 Species:Mus musculus


Alignment Length:256 Identity:82/256 - (32%)
Similarity:101/256 - (39%) Gaps:88/256 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   247 HIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTEEEKRPFIDEAKRLRAMHMKE 311
            |||||||||||||:.:||||....|.|||:|||||||..|:||.:.||.||:.||:|||..||.:
Mouse    39 HIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMAD 103

  Fly   312 HPDYKYRPRRKPKALRRDGYPYP----------MPYPSVP------------------------- 341
            :||||||||:|.|.......|.|          .|.|.:|                         
Mouse   104 YPDYKYRPRKKSKGAPAKARPRPPGGGGGGSRLKPGPQLPGRGGRRASGGPLGGGAAAPEDDDED 168

  Fly   342 ---------------------VEALRAGITPGYFAPGPT---AAAYHLGSHLGQTSTPT------ 376
                                 |.|.||...|...|.||:   |||......|.:...|.      
Mouse   169 EEEELLEVRLLETPGRELWRMVPAGRAARGPAERAQGPSGEGAAASAASPTLSEDEEPEEEEEEA 233

  Fly   377 ------TTQATLSGQ---------------MDKFALERSSYLSNSSQAS--AYSAYLDPSV 414
                  ..:..:||:               :|..||:|...|...|..|  .:..|..|.|
Mouse   234 ATAEEGEEETVVSGEEPLGFLSRMPPGPAGLDCSALDRDPDLLPPSGTSHFEFPDYCTPEV 294

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Sox21bNP_001261829.1 SOX-TCF_HMG-box 247..318 CDD:238684 46/70 (66%)