DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sox21b and Sox1

DIOPT Version :10

Sequence 1:NP_001261829.1 Gene:Sox21b / 39569 FlyBaseID:FBgn0042630 Length:587 Species:Drosophila melanogaster
Sequence 2:NP_033259.2 Gene:Sox1 / 20664 MGIID:98357 Length:391 Species:Mus musculus


Alignment Length:425 Identity:139/425 - (32%)
Similarity:176/425 - (41%) Gaps:140/425 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 TSHHSQSQALSHQTHSNGSSQLGGGSASGAGSVAGGAANSHHSAPASSSVMAAAAAAHLHHNSQA 207
            |..||...|.: .|:.:|.:..|||...|.|...||                             
Mouse     8 TDLHSPGGAQA-PTNLSGPAGAGGGGGGGGGGGGGG----------------------------- 42

  Fly   208 SPISNLHQNMGSLMNSGSSASDVFFSLMIQNTTKRQNEEHIKRPMNAFMVWSRLQRRKIAQDNPK 272
                            |:.|                |::.:||||||||||||.||||:||:|||
Mouse    43 ----------------GTKA----------------NQDRVKRPMNAFMVWSRGQRRKMAQENPK 75

  Fly   273 MHNSEISKRLGAEWKLLTEEEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKA-LRRDGYPYPMP 336
            |||||||||||||||:::|.||||||||||||||:|||||||||||||||.|. |::|.|     
Mouse    76 MHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLLKKDKY----- 135

  Fly   337 YPSVPVEALRAGITPGYFAPGPTAAAYHLGSHLGQTSTPTTTQATLSGQMDKFALERSSYLSNSS 401
                   :|..|:.......|..|.|..:|..:|         |...||    .||       |.
Mouse   136 -------SLAGGLLAAGAGGGGAAVAMGVGVGVG---------AAAVGQ----RLE-------SP 173

  Fly   402 QASAYSAYLDPSVLTKAYFDSKMYQDRAANYAFDISKIYGAQQHAAAHHQQQQQQQQQQQQQQQQ 466
            ..:|...|              .:.:..||.|:.     |:...|||.....|:.|         
Mouse   174 GGAAGGGY--------------AHVNGWANGAYP-----GSVAAAAAAAAMMQEAQ--------- 210

  Fly   467 LLLSGGGGSGGGGSASSHNNNSSSGLDDRDATPQLEAVESKPHLHSPS---DVG-LDYAQYAQQY 527
              |:.|...|.|| |..|.:         .|.|......:.||...|.   |:| |.|:..:...
Mouse   211 --LAYGQHPGAGG-AHPHAH---------PAHPHPHHPHAHPHNPQPMHRYDMGALQYSPISNSQ 263

  Fly   528 GGQLAAAAG-GAVGGGAAGAAGGSAGGGSGGATAA 561
            |...|:.:| |.:..|||.||..:|||....:..|
Mouse   264 GYMSASPSGYGGIPYGAAAAAAAAAGGAHQNSAVA 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21bNP_001261829.1 HMG-box_SoxB 246..325 CDD:438790 66/78 (85%)
Sox1NP_033259.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..52 16/105 (15%)
HMG-box_SoxB 49..128 CDD:438790 66/78 (85%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 214..249 11/44 (25%)
9aaTAD. /evidence=ECO:0000250|UniProtKB:P41225 342..350
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.