DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox21b and Sox5

DIOPT Version :9

Sequence 1:NP_001261829.1 Gene:Sox21b / 39569 FlyBaseID:FBgn0042630 Length:587 Species:Drosophila melanogaster
Sequence 2:XP_006237666.1 Gene:Sox5 / 140587 RGDID:620471 Length:764 Species:Rattus norvegicus


Alignment Length:351 Identity:101/351 - (28%)
Similarity:143/351 - (40%) Gaps:78/351 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 GSPNGSTGLGLHPHSALHLAHHHSQLHQHHPAGQQQQHSQP------PVSSSSTSHHSQSQALSH 154
            |.|.|:.|..:.|.|.     |..:.....|...:.:.:||      |.:|...|..|.:.  .|
  Rat   360 GLPQGNLGAAVSPTSI-----HTDKSTNSPPPKSKDEVAQPLNLSAKPKTSDGKSPASPTS--PH 417

  Fly   155 QTHSNGSSQLGGGSASGAGSVAGGAAN-------SHHSAPASSSVMAAAAAAHLHHNSQA----- 207
            ......:|..|...||...::|..:|.       :.|.|...:...|......|....||     
  Rat   418 MPALRINSGAGPLKASVPAALASPSARVSTIGYLNDHDAVTKAIQEARQMKEQLRREQQALDGKV 482

  Fly   208 -----------------SPISNLHQNMGSLMN--------------SGSS--ASDVFFSLMIQNT 239
                             :.:.:|.|.:....|              ||.|  ::.|..|.:.:.:
  Rat   483 AVVNSIGISNCRTEKEKTTLESLTQQLAVKQNEEGKFSHGMMDFNMSGDSDGSAGVSESRIYRES 547

  Fly   240 TKR-QNEEHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTEEEKRPFIDEAKR 303
            ..| .||.||||||||||||::.:||||.|..|.||||.|||.||:.||.:|..||:|:.:|..|
  Rat   548 RGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQAR 612

  Fly   304 LRAMHMKEHPDYKYRPRRKP--------------KALRRDGYPYPMPYPSVPVEALRAGITPGYF 354
            |...|::::|||||:||.|.              ||:.|:.......|.:|..:|.....|.|..
  Rat   613 LSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYFNVGQQAQIPIATAGVV 677

  Fly   355 APGPTAAA----YHLGS-HLGQTSTP 375
            .||..|.|    .||.| |...:|:|
  Rat   678 YPGAIAMAGMPSPHLPSEHSSVSSSP 703

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21bNP_001261829.1 SOX-TCF_HMG-box 247..318 CDD:238684 41/70 (59%)
Sox5XP_006237666.1 SOX-TCF_HMG-box 556..627 CDD:238684 41/70 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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