DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox21a and sox4

DIOPT Version :9

Sequence 1:NP_001261827.1 Gene:Sox21a / 39567 FlyBaseID:FBgn0036411 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_001039084.1 Gene:sox4 / 733893 XenbaseID:XB-GENE-480727 Length:387 Species:Xenopus tropicalis


Alignment Length:349 Identity:112/349 - (32%)
Similarity:153/349 - (43%) Gaps:88/349 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 NAPTSHSNSNTGSHHNS-------HDHIKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAE 158
            ::||..:.::||...:.       ..|||||||||||||:.:|||:.:.:|.|||:|||||||..
 Frog    33 SSPTPGATASTGGKADDPSWCKTPSGHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKR 97

  Fly   159 WKLLTEGQKRPFIDEAKRLRALHMKEHPDYKYRPRRKPKTLNKSPVPGGGGGGGGGGANGGVNAG 223
            ||.|.:|.|.|||.||:|||..||.::||||||||:|.|:               ||:..|..|.
 Frog    98 WKQLKDGDKIPFIREAERLRLKHMADYPDYKYRPRKKVKS---------------GGSKPGDKAC 147

  Fly   224 GA--GNSGPSGPGSVGSPKDMQPQLSPLGQSL---PH------LHGHPHQSPYQSHPHHPHPHPH 277
            |:  |:|.|:|....|.|    |.....|..|   ||      ....|.|.|  ..|.|     |
 Frog   148 GSPGGSSSPTGSTGSGKP----PVKKSSGTKLCNKPHTKLVLGARAFPEQQP--CIPDH-----H 201

  Fly   278 HVQLAAATLSAK---------YGFGSPLELSLPRLPNAFPGLAHYPLDPTLALDLQARLQAMYAG 333
            .:..:....|.:         |.||.......|.:.        .|..|||:   .:..:|....
 Frog   202 SLYKSRTAASGRQEKKPKHRVYIFGGAGYQGSPSVA--------VPASPTLS---SSSAEASDPL 255

  Fly   334 SIYHPWRYLPLISPETP---------PSP-PSSSGTGISSYGCVKSEKSSPNAVVASAASPPN-- 386
            |:|.........||.:|         .|| ||:|.:..||     |..|||::..:|::|...  
 Frog   256 SLYEDGSGSAQNSPGSPSEHDGYTRASSPAPSTSHSSSSS-----SAASSPSSASSSSSSSDEEL 315

  Fly   387 -----IIXPTP--LRFGAGTSSSA 403
                 .: |:|  .....|:.|||
 Frog   316 EDELLELNPSPGFENMSLGSFSSA 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21aNP_001261827.1 SOX-TCF_HMG-box 120..191 CDD:238684 46/70 (66%)
sox4NP_001039084.1 SOX-TCF_HMG-box 59..130 CDD:238684 46/70 (66%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10270
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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