DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sox21a and SOX10

DIOPT Version :9

Sequence 1:NP_001261827.1 Gene:Sox21a / 39567 FlyBaseID:FBgn0036411 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_008872.1 Gene:SOX10 / 6663 HGNCID:11190 Length:466 Species:Homo sapiens


Alignment Length:335 Identity:107/335 - (31%)
Similarity:138/335 - (41%) Gaps:113/335 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 SHDHIKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLTEGQKRPFIDEAKRLRALH 181
            |..|:||||||||||::..|||:|...|.:||:|:||.||..|:||.|..|||||:||:|||..|
Human   100 SKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQH 164

  Fly   182 MKEHPDYKYRPRRKPKTLNKSPVPGGGGGGGGGGANGGVNAGGA---------GNSGPSGPGSVG 237
            .|:||||||:|||:.   |.....|.....||....||..|..|         .:.|...|.|.|
Human   165 KKDHPDYKYQPRRRK---NGKAAQGEAECPGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDG 226

  Fly   238 SPKDMQPQLSPLGQSLPHLHGHP-----HQSPYQS----------------HPH----------- 270
            :|:      .|.|||    ||.|     .::..||                .||           
Human   227 NPE------HPSGQS----HGPPTPPTTPKTELQSGKADPKRDGRSMGEGGKPHIDFGNVDIGEI 281

  Fly   271 -H-------------------PHPHPHHVQLAAATLSAKYGFGSPLE--------LSLPRLPNAF 307
             |                   |:.||.||...:|   |.||.||.|.        :|.|      
Human   282 SHEVMSNMETFDVAELDQYLPPNGHPGHVSSYSA---AGYGLGSALAVASGHSAWISKP------ 337

  Fly   308 PGLAHYPLDPTLALDLQARLQAMYAGSIYHPWRYLPLISPETPP---SPPSSSGTGISS-----Y 364
            ||:|...:.|. .:|.:|:::...||             |:.||   ..||:|....:|     |
Human   338 PGVALPTVSPP-GVDAKAQVKTETAG-------------PQGPPHYTDQPSTSQIAYTSLSLPHY 388

  Fly   365 GCVKSEKSSP 374
            |......|.|
Human   389 GSAFPSISRP 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21aNP_001261827.1 SOX-TCF_HMG-box 120..191 CDD:238684 44/70 (63%)
SOX10NP_008872.1 Sox_N 12..93 CDD:315171
Dimerization (DIM). /evidence=ECO:0000303|PubMed:31194875 62..102 1/1 (100%)
SOX-TCF_HMG-box 103..173 CDD:238684 43/69 (62%)
Nuclear export signal 134..145 5/10 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 160..199 17/41 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..274 16/71 (23%)
Transactivation domain (TAM). /evidence=ECO:0000303|PubMed:31194875 228..310 16/91 (18%)
Transactivation domain (TAC). /evidence=ECO:0000303|PubMed:31194875 353..466 14/59 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 354..375 7/33 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 433..466
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..67
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165148484
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.740

Return to query results.
Submit another query.