DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox21a and LOC5667882

DIOPT Version :10

Sequence 1:NP_001261827.1 Gene:Sox21a / 39567 FlyBaseID:FBgn0036411 Length:407 Species:Drosophila melanogaster
Sequence 2:XP_061514536.1 Gene:LOC5667882 / 5667882 VectorBaseID:AGAMI1_003730 Length:355 Species:Anopheles gambiae


Alignment Length:402 Identity:139/402 - (34%)
Similarity:165/402 - (41%) Gaps:137/402 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 NHSHSSSLSPQLPGINLGLGMVGGLGMGMSVGVGSGSGNTTPPPMPPADLAVPPAAPTPVAPKMH 89
            ||...:||.....|..|..||                      .:|||....|....:|.:|..|
Mosquito     3 NHHTMASLGHPHYGFALSNGM----------------------DIPPAADFAPQPHHSPSSPTDH 45

  Fly    90 ------------------QHTHHHGNSHHNAPTSHSNSNTG---------------SHHNSHDHI 121
                              .|...||.:||:..:...|...|               :......||
Mosquito    46 LGLKRGLTFPASSLASLQGHGAMHGAAHHHHASLGQNGAAGGGGMGGGGGGGVNGQTSPGQEGHI 110

  Fly   122 KRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLTEGQKRPFIDEAKRLRALHMKEHP 186
            ||||||||||||.|||::|:|||||||||||||||:|||||||.||||||||||||||.||||||
Mosquito   111 KRPMNAFMVWSRLQRRQIAKDNPKMHNSEISKRLGSEWKLLTEAQKRPFIDEAKRLRATHMKEHP 175

  Fly   187 DYKYRPRRKPKTLNKSPVPGGGGGGGGGGA---NGGVNAGGAGNSGPSGPGSVGSPKDMQPQLSP 248
            ||||||||||    |:|:.....|.|..||   ||  .||..|:|.|.            |||.|
Mosquito   176 DYKYRPRRKP----KNPLASAANGLGALGAMQQNG--KAGSLGSSYPF------------PQLPP 222

  Fly   249 LGQSLPHLHGHPHQSPYQSHPHHPHPHPHHVQLAAATLSAKYGFGSPLELSLPRL----PNAFPG 309
            .     ....||.|   |...|:|.|:                |||...|:|.:|    ..:...
Mosquito   223 Y-----FAPAHPLQ---QLEQHYPVPY----------------FGSFDPLTLQKLHQSQQQSVHQ 263

  Fly   310 LAHYP----------------LDPT-------------LALDLQARLQAMYAGSIYHPWRYLPLI 345
            ..|.|                |.||             .|....|.|.|.::.|:|:    ....
Mosquito   264 AGHSPVGGLGGDSGKQSAGQQLPPTSLSSFYSNIYAGISASAAAAPLYAAHSNSLYN----TSST 324

  Fly   346 SPETPPSPPSSS 357
            |..:|.|.||:|
Mosquito   325 SSASPGSSPSAS 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21aNP_001261827.1 HMG-box_SoxB 119..198 CDD:438790 70/78 (90%)
LOC5667882XP_061514536.1 None

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