DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox21a and sox17

DIOPT Version :10

Sequence 1:NP_001261827.1 Gene:Sox21a / 39567 FlyBaseID:FBgn0036411 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_571362.2 Gene:sox17 / 30544 ZFINID:ZDB-GENE-991213-1 Length:413 Species:Danio rerio


Alignment Length:383 Identity:103/383 - (26%)
Similarity:151/383 - (39%) Gaps:121/383 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 GYTSSGSSNHSHSSSLSPQLPGINLGLGMVGGLGMGMSVGVGSGSGNTTPPPMPPADLAVPPAAP 81
            ||:|...|..|..||:            |:.|:|.                 .|..|        
Zfish     7 GYSSDDPSQTSSCSSV------------MMPGMGQ-----------------CPWVD-------- 34

  Fly    82 TPVAPKMHQHTHHHGNSHHNAPTSHSNSNTGSHHNSHDHIKRPMNAFMVWSRGQRRKMAQDNPKM 146
             |::|.....:.|.       ..|.:....|   .|...|:|||||||||::.:|:::||.||.:
Zfish    35 -PLSPLSDSKSKHE-------KCSAAGPGRG---KSEPRIRRPMNAFMVWAKDERKRLAQQNPDL 88

  Fly   147 HNSEISKRLGAEWKLLTEGQKRPFIDEAKRLRALHMKEHPDYKYRPRRKP-----KTLNKS-PVP 205
            ||:|:||.||..||.|....||||::||:|||..||::||:|||||||:.     |.|..| |:|
Zfish    89 HNAELSKMLGKSWKALPMVDKRPFVEEAERLRVKHMQDHPNYKYRPRRRKQVKRNKRLEPSFPLP 153

  Fly   206 G----------GGGGGGGGGANGGVNAGGAGNSGPSGPGSVGSPKDMQ------------PQLSP 248
            |          .|...|..||                    |.|:..:            |..||
Zfish   154 GMCDAKMTLCTEGMSAGYSGA--------------------GLPQYCENHTLFESYSLPTPDPSP 198

  Fly   249 LGQSLPHLHGH-PHQSPYQSHPHHPHPHPHHVQLAAATLSAKYGFGSPLELSLPRLPN-AFPGL- 310
            :.......... ..||.:..|    |...||.|.....|:..:..|:...|...:..: |:..: 
Zfish   199 MDAGTTEFFAQLQDQSAFSYH----HQQEHHFQEQTNILNDTHCHGNTQTLKSRQSHSIAYSNIN 259

  Fly   311 ------AHYPLDPTL-ALDLQARLQAMYAGS----IYHPWRYLPLISPETPPSPPSSS 357
                  .|.|::..| :::||   |..:..:    .:||..:|.:.:    .||.|||
Zfish   260 TNTNSNLHAPINAQLSSINLQ---QVFHENANPQISHHPGTHLNIFN----RSPSSSS 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21aNP_001261827.1 HMG-box_SoxB 119..198 CDD:438790 45/83 (54%)
sox17NP_571362.2 HMG-box_SoxF_SOX17 57..137 CDD:438850 46/82 (56%)
Sox17_18_mid <186..225 CDD:463454 7/42 (17%)

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