DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox21a and Sox8

DIOPT Version :9

Sequence 1:NP_001261827.1 Gene:Sox21a / 39567 FlyBaseID:FBgn0036411 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_001100459.1 Gene:Sox8 / 302993 RGDID:1309072 Length:463 Species:Rattus norvegicus


Alignment Length:410 Identity:118/410 - (28%)
Similarity:159/410 - (38%) Gaps:115/410 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 TSSGSSNHSHSSSLSPQLPGINLGLGMVGGLGMGMSVGVGSGSGNTTPPPMPPADLAVPPA---- 79
            |:|..|:...|.|.:|..|..:.|||..|          |.|.|:|.    ..||...|..    
  Rat    18 TASSMSHVEDSDSDAPPSPAGSEGLGRAG----------GGGRGDTA----EAADERFPACIRDA 68

  Fly    80 ------------APTPVAPKMHQHTHHHGNSHHNAPTSHSNSNTGSHHNSHDHIKRPMNAFMVWS 132
                        .|.||                       ....|....:..|:||||||||||:
  Rat    69 VSQVLKGYDWSLVPMPV-----------------------RGGGGGTLKAKPHVKRPMNAFMVWA 110

  Fly   133 RGQRRKMAQDNPKMHNSEISKRLGAEWKLLTEGQKRPFIDEAKRLRALHMKEHPDYKYRPRRKP- 196
            :..|||:|...|.:||:|:||.||..|:||:|.:||||::||:|||..|.|:||||||:|||:. 
  Rat   111 QAARRKLADQYPHLHNAELSKTLGKLWRLLSESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKS 175

  Fly   197 -KTLNKSPVPGGGGGGGGGGANGGVNAGGAGNSGPSGPGSVGSPKDMQPQLSPLGQSLPHLH--- 257
             ||             |...::.|...|    ..|.||        |....:.||.:  |.|   
  Rat   176 VKT-------------GRSDSDSGTELG----HHPGGP--------MYKTDTVLGDA--HRHSDH 213

  Fly   258 -GHPHQSPYQSHPHHPHPHPHHVQLAAATLSAKYGFGSPLELSLPRLPNAFPGLAHYPLDPTLAL 321
             |..|..|  :.|..|....|         .|..|....|.|...||.::  |..:.........
  Rat   214 TGQTHGPP--TPPTTPKTDLH---------QASNGSKQELRLEGRRLVDS--GRQNIDFSNVDIS 265

  Fly   322 DLQAR-LQAMYAGSIYHPWRYLPL---ISPETPPSPPSSSGTGISSYGCVKSEKSSPNAVVAS-- 380
            :|.:. :..|....::...:||||   .:..|.||..::||    |||......|....:.||  
  Rat   266 ELSSEVISNMDTFDVHEFDQYLPLNGHSALATEPSQATASG----SYGGASYSHSGATGIGASPV 326

  Fly   381 ---AASPPNIIXPT---PLR 394
               ..:|.... ||   |||
  Rat   327 WAHKGAPSASASPTEAGPLR 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21aNP_001261827.1 SOX-TCF_HMG-box 120..191 CDD:238684 43/70 (61%)
Sox8NP_001100459.1 Sox_N 18..86 CDD:403592 21/104 (20%)
SOX-TCF_HMG-box 98..168 CDD:238684 42/69 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342381
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.700

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