Protein Alignment Sox21a and Sox6

DIOPT Version :10

• Sequence 1: NP_001261827.1
• Gene: Sox21a / 39567
• FlyBaseID: FBgn0036411
• Length: 407
• Species: Drosophila melanogaster
• Sequence 2: XP_038962229.1
• Gene: Sox6 / 293165
• RGDID: 1309000
• Length: 855
• Species: Rattus norvegicus
• Alignment Length: 194
• Identity: 64/194 - (32%)
• Similarity: 92/194 - (47%)
• Gaps: 47/194 - (24%)

  Fly    20 SSGSSN------HSHSSSLSPQLPGINLGLGMVGGLGMGMSVGVGSGSGNTTPPPMPPADLAVP- 77
            |.|.||      .:...:|.|||.|.:   ...|.||.|:                  .||..|
  Rat   558 SMGLSNCRNEKERTRFENLGPQLTGKS---SEDGKLGPGV------------------IDLTRPE 601

  Fly    78 ----PAAPTPVAPKMHQHTHHHGNSHHNAPTSHSN-------SNTGSHHNSHDHIKRPMNAFMVW 131
                ..|....|.|:.|        ::..||..:.       .:.....:|..||||||||||||
  Rat   602 DAEGSKAMNGSAAKLQQ--------YYCWPTGGATVAEARVYRDARGRASSEPHIKRPMNAFMVW 658

  Fly   132 SRGQRRKMAQDNPKMHNSEISKRLGAEWKLLTEGQKRPFIDEAKRLRALHMKEHPDYKYRPRRK 195
            ::.:|||:.|..|.||||.|||.||:.||.::..:|:|:.:|..||..:|::::|:|||:||.|
  Rat   659 AKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPK 722

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Sox21a	NP_001261827.1	HMG-box_SoxB	119..198	CDD:438790	41/77 (53%)
Sox6	XP_038962229.1	HMG-box_EGL13-like	646..723	CDD:438848	41/77 (53%)