Protein Alignment Sox21a and Sox6

DIOPT Version :9

• Sequence 1: NP_001261827.1
• Gene: Sox21a / 39567
• FlyBaseID: FBgn0036411
• Length: 407
• Species: Drosophila melanogaster
• Sequence 2: XP_038962229.1
• Gene: Sox6 / 293165
• RGDID: 1309000
• Length: 855
• Species: Rattus norvegicus
• Alignment Length: 194
• Identity: 64/194 - (32%)
• Similarity: 92/194 - (47%)
• Gaps: 47/194 - (24%)

  Fly    20 SSGSSN------HSHSSSLSPQLPGINLGLGMVGGLGMGMSVGVGSGSGNTTPPPMPPADLAVP- 77
            |.|.||      .:...:|.|||.|.:   ...|.||.|:                  .||..|
  Rat   558 SMGLSNCRNEKERTRFENLGPQLTGKS---SEDGKLGPGV------------------IDLTRPE 601

  Fly    78 ----PAAPTPVAPKMHQHTHHHGNSHHNAPTSHSN-------SNTGSHHNSHDHIKRPMNAFMVW 131
                ..|....|.|:.|        ::..||..:.       .:.....:|..||||||||||||
  Rat   602 DAEGSKAMNGSAAKLQQ--------YYCWPTGGATVAEARVYRDARGRASSEPHIKRPMNAFMVW 658

  Fly   132 SRGQRRKMAQDNPKMHNSEISKRLGAEWKLLTEGQKRPFIDEAKRLRALHMKEHPDYKYRPRRK 195
            ::.:|||:.|..|.||||.|||.||:.||.::..:|:|:.:|..||..:|::::|:|||:||.|
  Rat   659 AKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPK 722

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Sox21a	NP_001261827.1	SOX-TCF_HMG-box	120..191	CDD:238684	37/70 (53%)
Sox6	XP_038962229.1	SOX-TCF_HMG-box	647..718	CDD:238684	37/70 (53%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C166342362
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG0527
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.740