DRSC/TRiP Functional Genomics Resources

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Protein Alignment Frl and fhdc4

DIOPT Version :9

Sequence 1:NP_729954.2 Gene:Frl / 39561 FlyBaseID:FBgn0267795 Length:1183 Species:Drosophila melanogaster
Sequence 2:XP_694558.2 Gene:fhdc4 / 566196 ZFINID:ZDB-GENE-131127-25 Length:752 Species:Danio rerio


Alignment Length:626 Identity:149/626 - (23%)
Similarity:251/626 - (40%) Gaps:156/626 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   623 PPPPPPPAPPAPPPPPGFSPLGSPSGSLASTAPSPPHAPPMLSSFQPPPPPVAG---FMPAPDGA 684
            |||||||.||.|||||                              |||.|..|   |...|..|
Zfish     4 PPPPPPPPPPPPPPPP------------------------------PPPAPFPGGGQFTRGPTRA 38

  Fly   685 MTIKRKVPTKYKLPTLNWIALKPNQVRG--TIFNELDDEKIFKQIDFNEFEERFKIGIGGALRNG 747
            .|::          ..||..:..|.|.|  .|:.|.:.|   .::|....||.|           
Zfish    39 STMR----------NFNWEPIPKNNVLGKTNIWTEKNRE---FELDTKRMEELF----------- 79

  Fly   748 SNGTEVD-GSLQSSKR-------FKRPDN--VSLLEHTRLRNIAI----SRRKLGMPIDDVIAAI 798
               :.|| ..:|:|.|       ...|.|  ||:|...:..||.|    .||.:...|:|::...
Zfish    80 ---SRVDQKQVQNSNRRSIRQSPTNAPGNEMVSILNAKKSMNIGIFLKQFRRSVNGMIEDIVNGR 141

  Fly   799 HSLDLKKLSLENVELLQKMVPTDAEVKSYKEYIIERKDQQLLTEEDKFMLQLSRV----ERISSK 859
            ..    |.....::.:.|::|.:.||:..:::   :.|..:|:|.|:||:||.:|    ||::. 
Zfish   142 GD----KFGPGKLKEMCKLLPEEGEVRQLRDF---KGDPSVLSEADRFMVQLVKVPCYEERLNC- 198

  Fly   860 LAIMNYMGNFVDSVHLISPQVQSIAGASTSLKQSRKFKAVLEIVLAFGNYLNS-NKRGPAYGFKL 923
            |.:.....:|:|.|   |..:..:..|...|.......:|:.:||..|||:|| ...|.|.||::
Zfish   199 LVLKEEFPHFMDEV---SHAIAVMTSAGRELLDCADLHSVIRLVLKTGNYMNSGGYAGSAVGFRI 260

  Fly   924 QSLDTLIDTKSTDKRSSLLHYIVATIRAKFPELLNFESELYGTDKAASVALENVVADVQ----EL 984
            .||..|.|||:.....:|:||:|...:.....||.|..:|.....||.:..:.:..|.|    ::
Zfish   261 TSLLKLADTKANKPGMNLMHYVVMQAQKIDAALLKFPEQLQNIGDAARIHKQEIETDFQKEISKV 325

  Fly   985 EKGMDLVRKEAELRVKGAQTHILRDFLNNSEDKLKKIKSDLRHAQEAFKECVEYFGDSSRNAD-- 1047
            :|..:...|:.:|..:      :||||.|:|.::::::...:..........:||.:......  
Zfish   326 QKSKENASKQPDLEEQ------MRDFLQNAETRIQEMEESFKMLSAVSDSVAQYFCEDPTQFKLE 384

  Fly  1048 --AAAFFALIVRFTRA-----------FKQHDQENEQRLRLEKAAALAASKKEN------DQVLM 1093
              .:.|::...:|.||           .|:..:|..|.....::.|..:|:.::      :.:|.
Zfish   385 ECCSIFYSFCEKFKRAVQENLDRDILEVKRRQREGSQNAAKRRSTATCSSRDKDIEGAALESILQ 449

  Fly  1094 RNKVNQKKQQL----PSNGALS--LQEAVINELKSKAHSVREKKLLQQDEVYNGALEDILLGLKS 1152
            |....|.:::.    |:.|.|:  |||   |....:|        :::|....|||:..::   .
Zfish   450 RFNSRQSRRRAGNASPTLGNLTDILQE---NRPADRA--------VKRDSWIKGALQSSVI---K 500

  Fly  1153 EPYRRADAVRRSQ-------------RRRIDNNRLSRTLEE 1180
            |.:.|.:..:..|             .....|.|||.|.|:
Zfish   501 ESFEREEMPKNPQITISSPAHETPSTPNSTVNQRLSVTTEQ 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FrlNP_729954.2 Drf_GBD 77..371 CDD:283920
Drf_FH3 374..567 CDD:283917
FH2 687..1063 CDD:280362 97/415 (23%)
fhdc4XP_694558.2 FH2 41..398 CDD:302999 94/400 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3069
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

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