DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6833 and SDN1

DIOPT Version :10

Sequence 1:NP_648689.1 Gene:CG6833 / 39559 FlyBaseID:FBgn0036405 Length:290 Species:Drosophila melanogaster
Sequence 2:NP_190579.2 Gene:SDN1 / 824172 AraportID:AT3G50100 Length:409 Species:Arabidopsis thaliana


Alignment Length:168 Identity:71/168 - (42%)
Similarity:93/168 - (55%) Gaps:15/168 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 MRMKKKAHRNRILAMDCEMVGVGHNTRDDMLARVSIVNRMGHVLLDKYVKPRKEVTDYRTSVSGI 170
            |:|||......::|:|||||.....|  :.|.||.:|:|...|:||::|||.|.|.||||.::||
plant   129 MKMKKVMESTNMVAVDCEMVLCEDGT--EGLVRVGVVDRDLKVILDEFVKPNKPVVDYRTDITGI 191

  Fly   171 RPQDIANGEDFAAVQNEVMK--LIHGRILVGHGLRNDLAVLGIRHPFHDIRDTS---HYKPLCKL 230
            ..:||.|.........|.::  |..|.|||||.|..||.||.|.||  .:.||:   .|....||
plant   192 TAEDIENASLSVVDIQETLQPFLSTGTILVGHSLNRDLEVLKIDHP--KVIDTALVFKYPNTRKL 254

  Fly   231 ISNTHTPSLKRLTKAVLGQEI-QTG-EHNSVEDARAAM 266
                ..|||..|.|::||.|: :|| .|:.|.||.|||
plant   255 ----RRPSLNNLCKSILGYEVRKTGVPHDCVHDASAAM 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6833NP_648689.1 REX4_like 118..270 CDD:99847 67/156 (43%)
SDN1NP_190579.2 REX1_like 141..292 CDD:99848 67/156 (43%)
RRM_SF 317..377 CDD:409669
Blue background indicates that the domain is not in the aligned region.

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