DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hsc70Cb and SSB2

DIOPT Version :9

Sequence 1:NP_001189103.1 Gene:Hsc70Cb / 39557 FlyBaseID:FBgn0026418 Length:836 Species:Drosophila melanogaster
Sequence 2:NP_014190.1 Gene:SSB2 / 855512 SGDID:S000005153 Length:613 Species:Saccharomyces cerevisiae


Alignment Length:600 Identity:183/600 - (30%)
Similarity:310/600 - (51%) Gaps:67/600 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IGIDFGNESCYVAAARSGGIETLANDYSLRATPSFVAFDGKKRIIGVAAKNQQVTNMKNTVGGFK 68
            ||||.|.....||...| .:|.:||:...|.|||||||..::|:||.|||||...|.:|||...|
Yeast    10 IGIDLGTTYSCVATYES-SVEIIANEQGNRVTPSFVAFTPQERLIGDAAKNQAALNPRNTVFDAK 73

  Fly    69 RLLGRKFNDPHVQHELTSIPARVEARGDGSIGIKVNYLGEDQHFGPEQLTAMLFTKLKETSAAAM 133
            ||:||:|:|..||.::.:.|.:| ...||:..|:|.||.|.:.|.|::::||:.||:||.:.|.:
Yeast    74 RLIGRRFDDESVQKDMKTWPFKV-IDVDGNPVIEVQYLEETKTFSPQEISAMVLTKMKEIAEAKI 137

  Fly   134 QTQVNDCVIACPVFFTNAERKALLDAAQIAGLNVLRLMNETTATALAYGFYKNDLFEDKPRNVIF 198
            ..:|...||..|.:|.:|:|:|..||..|:||||||::||.||.|:|||.....  .:|.|:|:.
Yeast   138 GKKVEKAVITVPAYFNDAQRQATKDAGAISGLNVLRIINEPTAAAIAYGLGAGK--SEKERHVLI 200

  Fly   199 VDFGHSSLQASACAFTKGKLKMLASTWD-QIGGRDIDLALGDYFAKEFQERYKINAKTNARANLR 262
            .|.|..:...|......|...:.:::.: .:||:|.|..|.::|..||:::..::...:|||..|
Yeast   201 FDLGGGTFDVSLLHIAGGVYTVKSTSGNTHLGGQDFDTNLLEHFKAEFKKKTGLDISDDARALRR 265

  Fly   263 LLTEIEKLKKQMSANSTKLPLNIECFLDDIDVSSSMQRSQMEELCAPVLQRVEQTFKRLLAESKL 327
            |.|..|:.|:.:| :.|:..:.::...|..|..||:.|::.|:|.|.:.:...:..:::|.::|:
Yeast   266 LRTAAERAKRTLS-SVTQTTVEVDSLFDGEDFESSLTRARFEDLNAALFKSTLEPVEQVLKDAKI 329

  Fly   328 QLDDIHSVEIVGGSSRIPSVKQLIEQVFN-KPASTTLNQDEAVSRGAALQCAIM---SPAVRVRE 388
            ....|..|.:||||:|||.|::|:...|: |....::|.||||:.|||:|.||:   |.:...::
Yeast   330 SKSQIDEVVLVGGSTRIPKVQKLLSDFFDGKQLEKSINPDEAVAYGAAVQGAILTGQSTSDETKD 394

  Fly   389 FGVTDIQNYAVKVLWDSEGSAAPGEI--EIFPQYHASPFSRLLTINRKGPFNVS---------IV 442
            ..:.|:...::       |....|:|  .:.|:....|     ||.|:....||         :.
Yeast   395 LLLLDVAPLSL-------GVGMQGDIFGIVVPRNTTVP-----TIKRRTFTTVSDNQTTVQFPVY 447

  Fly   443 YGQQVPYPDQT-IGVWKVKDVKPTERGEGQDVKLKVRINNNGIVLISSATLVEKKEAEEA----A 502
            .|::|...:.| :|.:.:|::.....|| ..::....::.|||:.:   |.|||...:.:    :
Yeast   448 QGERVNCKENTLLGEFDLKNIPMMPAGE-PVLEAIFEVDANGILKV---TAVEKSTGKSSNITIS 508

  Fly   503 AAAEQAASEEKPGDQTNNTGEPADGQQEAYCENEDDNNTSTASSPGGQGWAQRVKGWFGS----- 562
            .|..:.:|||.  ::..|..|......||:.:..:..              ||::.:..|     
Yeast   509 NAVGRLSSEEI--EKMVNQAEEFKAADEAFAKKHEAR--------------QRLESYVASIEQTV 557

  Fly   563 ----GADKKKKASKA 573
                .:.|.|:.||:
Yeast   558 TDPVLSSKLKRGSKS 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hsc70CbNP_001189103.1 HSPA4_like_NDB 2..381 CDD:212670 142/381 (37%)
HSP70 3..682 CDD:278441 183/599 (31%)
SSB2NP_014190.1 PTZ00009 6..575 CDD:240227 183/599 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0443
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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