DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hsc70Cb and Hspa12a

DIOPT Version :9

Sequence 1:NP_001189103.1 Gene:Hsc70Cb / 39557 FlyBaseID:FBgn0026418 Length:836 Species:Drosophila melanogaster
Sequence 2:XP_006527440.1 Gene:Hspa12a / 73442 MGIID:1920692 Length:695 Species:Mus musculus


Alignment Length:581 Identity:115/581 - (19%)
Similarity:191/581 - (32%) Gaps:188/581 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VIGIDFGN-------------ESCYVAAARSGGIETLANDYSLRATPSFVAFDGKKRI--IGVAA 52
            |:.||||.             |..:|.....||...::|    :.||:.:....:::.  .|.||
Mouse    78 VVAIDFGTTSSGYAYSFTKEPECIHVMRRWEGGDPGVSN----QKTPTTILLTPERKFHSFGYAA 138

  Fly    53 KN----------QQVTNMKNTVGGFKRLLGRKFNDPHVQHELTSIPARVEARGDGSIGIKVNYLG 107
            ::          :|...::.    ||..|       |...:||.......|.|.     ||..| 
Mouse   139 RDFYHDLDPSEAKQWLYLEK----FKMKL-------HTTGDLTMDTDLTAANGK-----KVKAL- 186

  Fly   108 EDQHFGPEQLTAMLFTKLKETSAAAMQTQVND--------CVIACPVFFTNAERKALLDAAQIAG 164
                    ::.|......||.:...:..|...        .||..|..:....::.:.:||..||
Mouse   187 --------EIFAYALQYFKEQALKELSDQAGSDFENSDVRWVITVPAIWKQPAKQFMREAAYQAG 243

  Fly   165 L----------------------NVLRL--MNETTATALAYGFYKNDLF--------EDKPRN-- 195
            |                      ..|||  |.|.::.|:..|:..:|..        |...||  
Mouse   244 LASPENSEQLIIALEPEAASIYCRKLRLHQMIELSSKAVVNGYSASDTVGAGFAQAKEHVRRNRQ 308

  Fly   196 ----------------------VIFVDFGHSS--LQASACAFTKGKLKML-ASTWDQIGGRDIDL 235
                                  .:.||.|..:  |........:|.||.| .:|....|...:|.
Mouse   309 SRTFLVENVIGEIWSELEEGDKYVVVDSGGGTVDLTVHQIRLPEGHLKELYKATGGPYGSLGVDY 373

  Fly   236 ----ALGDYFAKEFQERYKINAKTNARANLRLLTEIEKLKKQMSANSTKLPLNIECFLDDID--- 293
                .|...|.::|.|::||.   ...|.:.|:...|..|:..:.:.|. ||||......||   
Mouse   374 EFEKLLCKIFGEDFIEQFKIK---RPAAWVDLMIAFESRKRAAAPDRTN-PLNITLPFSFIDYYK 434

  Fly   294 ------VSSSMQRSQ------------------MEELCAPVLQRVEQTFKRLLAESKLQLDDIHS 334
                  |..::::|.                  |..|..|.:..:.:..:.|.  .|.::..:..
Mouse   435 KFRGHSVEHALRKSNVDFVKWSSQGMLRMSPDAMNALFKPTIDSIIEHLRDLF--QKPEVSTVKF 497

  Fly   335 VEIVGGSSRIPSVKQLIEQVFNKPASTTLNQDEAVS--RGAALQCAIMSPAV-RVRE----FGVT 392
            :.:|||.:..|.::|.::..|.......:.||..::  :||.|  ..:.||| :||.    :||.
Mouse   498 LFLVGGFAEAPLLQQAVQTAFGDKCRIIIPQDVGLTILKGAVL--FGLDPAVIKVRRSPLTYGVG 560

  Fly   393 DIQNYA------VKVL------W---------DSEGSAAPGEIEIFPQYHASPFSRLLTIN 432
            .:..|.      .|:|      |         .::.|.|.||:.......|.|...::.||
Mouse   561 VLNRYVEGKHPPEKLLVKDGTRWCTDVFDKFISADQSVALGELVKRSYTPAKPSQLVIIIN 621

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hsc70CbNP_001189103.1 HSPA4_like_NDB 2..381 CDD:212670 96/502 (19%)
HSP70 3..682 CDD:278441 115/581 (20%)
Hspa12aXP_006527440.1 HSPA12A_like_NBD 77..543 CDD:212685 96/501 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0443
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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