DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hsc70Cb and hspa8b

DIOPT Version :9

Sequence 1:NP_001189103.1 Gene:Hsc70Cb / 39557 FlyBaseID:FBgn0026418 Length:836 Species:Drosophila melanogaster
Sequence 2:NP_001186941.1 Gene:hspa8b / 562935 ZFINID:ZDB-GENE-121214-31 Length:647 Species:Danio rerio


Alignment Length:690 Identity:188/690 - (27%)
Similarity:334/690 - (48%) Gaps:101/690 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IGIDFGNESCYVAAARSGGIETLANDYSLRATPSFVAFDGKKRIIGVAAKNQQVTNMKNTVGGFK 68
            :|||.|.....|...:.|.:|.:|||...|.|||:|||...:|:||.|||||...|..|||...|
Zfish     7 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPTNTVFDAK 71

  Fly    69 RLLGRKFNDPHVQHELTSIPARVEARGDGSIGIKVNYLGEDQHFGPEQLTAMLFTKLKETSAAAM 133
            ||:||:|:|..||.::...|..| ...:....::|.|.||.:.|.||::::|:.||:||.:.|.:
Zfish    72 RLIGRRFDDAVVQSDMKHWPFTV-INDNLRPKVQVEYKGETKTFYPEEVSSMVLTKMKEIAEAYL 135

  Fly   134 QTQVNDCVIACPVFFTNAERKALLDAAQIAGLNVLRLMNETTATALAYGFYKNDLFEDKPRNVIF 198
            ...:.:.||..|.:|.:::|:|..||..|:||||||::||.||.|:|||..|.   ....|||:.
Zfish   136 GKTITNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKK---VGSERNVLI 197

  Fly   199 VDFGHSSLQASACAFTKGKLKMLASTWD-QIGGRDIDLALGDYFAKEFQERYKINAKTNARANLR 262
            .|.|..:...|......|..::.::..| .:||.|.|..:..:|..||:.:||.:...|.||..|
Zfish   198 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVTHFISEFKRKYKKDISDNKRAVRR 262

  Fly   263 LLTEIEKLKKQMSANSTKLPLNIECFLDDIDVSSSMQRSQMEELCAPVLQRVEQTFKRLLAESKL 327
            |.|..|:.|:.:| :||:..:.|:...:.||..:|:.|::.|||.|.:.:......::.|.::||
Zfish   263 LRTACERAKRTLS-SSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKSLRDAKL 326

  Fly   328 QLDDIHSVEIVGGSSRIPSVKQLIEQVFN-KPASTTLNQDEAVSRGAALQCAIM--SPAVRVREF 389
            ....:|.:.:||||:|||.:::|::..|| |..:.::|.||||:.|||:|.||:  ..:..|::.
Zfish   327 DKSQVHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILCGDKSENVQDL 391

  Fly   390 GVTDIQNYAVKVLWDSEGSAAPGEIEIFPQYHAS-PFSRLLTI-----NRKGPFNVSIVYGQQVP 448
            .:.|:...::.:      ..|.|.:.|..:.:.: |..:..|.     |:.|.. :.:..|::..
Zfish   392 LLLDVTPLSLGI------ETAGGVMTILIKRNTTIPTKQTQTFTTYCDNQPGVL-IQVYEGERAM 449

  Fly   449 YPDQT-IGVWKVKDVKPTERGEGQDVKLKVRINNNGIVLISSATLVEKKEAEEAAAAAEQAASEE 512
            ..|.. :|.:::..:.|..||..| :::...|:.|||:.:|               |.:::..:|
Zfish   450 TKDNNLLGKFELTGIPPAPRGVPQ-IEVTFDIDANGIMNVS---------------AVDKSTGKE 498

  Fly   513 KPGDQTNNTGEPADGQQEAYCENEDDNNTSTASSPGGQGWAQRVKGWFGSGADKKKKASKATELP 577
            .....||:.|.                                                      
Zfish   499 NKITITNDKGR------------------------------------------------------ 509

  Fly   578 LECTTHGFSPVDLSNYTQQESKMIGNDQKETERIDAKNALEEFVYDMRNKLQGGPFERYVVEAER 642
                   .|..|:....|:..|....|..:.|::.|||.||.:.::|::.::....:..:.|.::
Zfish   510 -------LSKEDIERMVQEAEKYKAEDDVQREKVSAKNGLESYSFNMKSTVEDEKLKGKISEEDK 567

  Fly   643 EKIVSQLNDLENWLYEDGEDCERDIYTSRLQALHQKTDPI 682
            :||:::.|::.:|| :..:..|::.:..:.:.|.:..:||
Zfish   568 QKIINKCNEVISWL-DKNQTAEKEEFEHQQKELEKLCNPI 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hsc70CbNP_001189103.1 HSPA4_like_NDB 2..381 CDD:212670 140/380 (37%)
HSP70 3..682 CDD:278441 186/688 (27%)
hspa8bNP_001186941.1 PTZ00009 1..613 CDD:240227 188/690 (27%)
HSPA1-2_6-8-like_NBD 6..380 CDD:212675 139/377 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592208
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0443
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.