DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hsc70Cb and hspa12a.2

DIOPT Version :9

Sequence 1:NP_001189103.1 Gene:Hsc70Cb / 39557 FlyBaseID:FBgn0026418 Length:836 Species:Drosophila melanogaster
Sequence 2:XP_003198604.1 Gene:hspa12a.2 / 559237 ZFINID:ZDB-GENE-061009-20 Length:571 Species:Danio rerio


Alignment Length:621 Identity:119/621 - (19%)
Similarity:219/621 - (35%) Gaps:195/621 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IGIDFGNE-SCYVAAAR-----------SGGIETLANDYSLRATPSFVAFDGKKRI--IGVAAKN 54
            |.||||.. |.|..:.:           :.|::   ..|:...||:.:.||..:..  .|..|  
Zfish     8 IAIDFGTSYSGYAISFKTKQPQESILIPNWGVD---YGYNTFKTPTCILFDEHETFQKFGYDA-- 67

  Fly    55 QQVTNMKNTVGGFKRLLGRKFNDPHVQHELTSIPAR----VEARGDGSIGIKVNYLGEDQHFGPE 115
             .:|..::||   |....:.|...|.:.||......    :.|:..|.:. .:....|...:   
Zfish    68 -MMTYTRSTV---KSQARKSFLFEHFKMELYDKEIHRDLMITAKNGGQMK-ALTVFSESLRY--- 124

  Fly   116 QLTAMLFTKLKE--TSAAAMQTQVNDCVIACPVFFTNAERKALLDAAQIAGLNVLRLMNETTATA 178
             |......|:||  |....:.:.|. .|:..|..:..|.::.:.:||..||| |:....|....|
Zfish   125 -LKDHALEKVKENPTGKTFIASDVT-WVLTVPAIWNAAAKQFMREAAIEAGL-VIESEPERLVFA 186

  Fly   179 L-------------AYGFYK----NDLFEDKP-RNVIFVDFGHSSLQASACAFTK-GKLKML-AS 223
            |             :.|:..    .|..|.|| ...:.||.|..::..:.....: ||||.| |:
Zfish   187 LEPEAASIYCKHLPSEGYISEEACRDTLEQKPGTQYMVVDCGGGTIDITVHEVVEDGKLKELNAA 251

  Fly   224 TWDQIGGRDIDLALGDYFAKEFQERYKINAKTNARANLRLLTEIEKLKKQMSANSTKLPLNIECF 288
            :.:.:||:.:|.....:..:.|.|:.                 ..|.::...|.:.||..     
Zfish   252 SGNDMGGQTVDRKFISFLKEIFSEKI-----------------YNKFEQDFPAEALKLKY----- 294

  Fly   289 LDDIDVSSSMQRSQMEELCAPVLQR-------VEQTFKR-----------LLAESKLQ------- 328
              ||.::.|..:..:.: |...||.       :|..|:.           ::.|.|||       
Zfish   295 --DIALAKSCDQLVLIQ-CPVTLQELAKKEKAIESYFEGVEGAEWDEGSIIIKEDKLQSFFDESL 356

  Fly   329 ------LDDIHS-----VE---IVGGSSRIPSVKQLIEQVFNKPASTTLNQDEAVSRGAALQCAI 379
                  |:.|.|     :|   :|||.:....:|:.:::.|:|.......:.:.|....|::.|.
Zfish   357 KTTAEKLEKITSNPELNIEYMLLVGGFAECKILKKFLKERFDKCKIVCPVEPQVVIIKGAIRYAK 421

  Fly   380 MSPAVRVREFGVTDIQNYAVKVLWDSEGSAAPGEIEIFPQYHASPFSRLL--------------- 429
            ....|:.|...:|    |.:::                    .:||.::|               
Zfish   422 QPKVVKSRMSALT----YGIRI--------------------DAPFDKVLHKDKSNYVNSEGQTY 462

  Fly   430 ------TINRKGP-----------FN------VSIVY------GQQVPYPD----QTIGVWKVKD 461
                  |..|||.           ||      .|.::      .:||.:.|    :.:|.::| .
Zfish   463 CDVCFETFVRKGESVNCDEVRQFFFNPSHTNQTSAIFQFFSTNEKQVQFIDEPGVEPVGFFEV-G 526

  Fly   462 VKPTERGEGQDVKLKVRINNNGIVLISSATLVEKKE 497
            :..|:.|..:::||:::..:.  .:.::||.|:..|
Zfish   527 MPKTDGGLSREIKLEIKFGST--EMKATATDVDSGE 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hsc70CbNP_001189103.1 HSPA4_like_NDB 2..381 CDD:212670 92/455 (20%)
HSP70 3..682 CDD:278441 119/621 (19%)
hspa12a.2XP_003198604.1 HSPA12_like_NBD 6..420 CDD:212671 91/452 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0443
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.