DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hsc70Cb and Hspa14

DIOPT Version :9

Sequence 1:NP_001189103.1 Gene:Hsc70Cb / 39557 FlyBaseID:FBgn0026418 Length:836 Species:Drosophila melanogaster
Sequence 2:NP_001004257.1 Gene:Hspa14 / 307133 RGDID:1303296 Length:509 Species:Rattus norvegicus


Alignment Length:391 Identity:128/391 - (32%)
Similarity:212/391 - (54%) Gaps:24/391 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSVIGIDFGNESCYVAAARSGGIETLANDYSLRATPSFVAFDGKKRIIGVAAKNQQVTNMKNTVG 65
            |:.||:..|..|..||..:.|..:.:|||...|.||:.||:..:::::|:|||..::.|:.:||.
  Rat     1 MAAIGVHLGCTSACVAVYKDGRADVVANDAGDRVTPAVVAYSEREQVVGLAAKQSRIRNISSTVV 65

  Fly    66 GFKRLLGRKFNDPHVQHELTSIPARVEARGDGSIGIKVNYLGEDQHFGPEQLTAMLFTKLKETSA 130
            ..|::|||...||..|..::.....|..: :|.:..:::...|.:...||.:..::|:|:|||:.
  Rat    66 KVKQILGRSTADPQAQKYISESKCLVIEK-NGKLQYEIDTGEETKLVSPEDVARLIFSKMKETAH 129

  Fly   131 AAMQTQVNDCVIACPVFFTNAERKALLDAAQIAGLNVLRLMNETTATALAYGFYKNDLFEDKP-- 193
            :.:.:..||.|:..|..|...::.||.:||..||.|||||::|.:|..||||     :.:|.|  
  Rat   130 SVLGSDANDVVVTVPFDFGEKQKSALGEAAGAAGFNVLRLIHEPSAALLAYG-----IGQDCPTG 189

  Fly   194 -RNVIFVDFGHSSLQASACAFTKGKLKMLA-STWDQIGGRDIDLALGDYFAKEFQERYKINAKTN 256
             .||:....|.:||..|......|..::|: :|.|.|||.....:|..|.|.|||..:|.:.:.:
  Rat   190 KSNVLVFKLGGTSLSLSIMEVNSGMYRVLSTNTSDNIGGVHFTDSLAQYLASEFQRLFKHDVRGS 254

  Fly   257 ARANLRLLTEIEKLKKQMSANSTKLPLNIECFLDDI----DVSSSMQRSQMEELCAPVLQRVEQT 317
            |||.::|:...|..|..:|...     :..||:|.:    |...::.|::.|.||:|:..:..:.
  Rat   255 ARAMMKLMNSAEVAKHSLSTLG-----SANCFVDSLYEGQDFDCNVSRARFELLCSPLFNKCIEA 314

  Fly   318 FKRLLAESKLQLDDIHSVEIVGGSSRIPSVKQLIEQVFNKPASTTLNQ---DEAVSRGAALQCAI 379
            .:.||.:|....|||:.|.:.|||||||.::|||:.:|  ||...||.   ||.:..|||::..|
  Rat   315 VRALLQQSGFTADDINKVVLCGGSSRIPRLQQLIKDLF--PAGDLLNSIPPDEVIPIGAAIEAGI 377

  Fly   380 M 380
            :
  Rat   378 L 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hsc70CbNP_001189103.1 HSPA4_like_NDB 2..381 CDD:212670 127/390 (33%)
HSP70 3..682 CDD:278441 127/389 (33%)
Hspa14NP_001004257.1 HSPA14-like_NBD 2..376 CDD:212680 126/386 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0443
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

Return to query results.
Submit another query.