DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptip and brc1

DIOPT Version :9

Sequence 1:NP_729947.2 Gene:Ptip / 39552 FlyBaseID:FBgn0052133 Length:2294 Species:Drosophila melanogaster
Sequence 2:NP_595173.1 Gene:brc1 / 2541071 PomBaseID:SPBC582.05c Length:878 Species:Schizosaccharomyces pombe


Alignment Length:608 Identity:107/608 - (17%)
Similarity:191/608 - (31%) Gaps:230/608 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly  1877 TAYWLSDI-CLKRQLMPPWQPLHLPFPSQFGYRKPLERYIITSEGFEGEEVVRLQQMAEECGAIY 1940
            |..||.:: .|.....|....||.|||| .|:   |:..::....:.....:.|:::...|||.|
pombe   285 TISWLLNLF
VLGSWKSPLLNALHYPFPS-VGF---LKDQMVAVTNYTDAARIYLEKLLLACGATY 345

  Fly  1941 TSYLSKVNTVVVCKQLEGNKFNAAKEWNIPMVNALWLSDVCIGNLSGLSQYENP-----KYQQYN 2000
            |..|...||:::.....|.|:.|||.||||.|:..||.. ...|||..:..:.|     .|..:.
pombe   346 TKDLKPTNTLLIAASSYGQKYGAAKVWNIPTVHHSWLYS-SFKNLSSQAFTDFPVPLDDSYMDFI 409

  Fly  2001 LVAPFRIEC----NLVAHLLTAWKAPI---------------NLTQEAHERVKRHLSDPYG---- 2042
            ...|..:|.    :.:...||...:.:               |.|.|..|:..:..||.:|    
pombe   410 FPCPLNVEKGSFEDTLKSSLTKGNSEVLLDDLSDPSVSSIKGNKTNEELEKEFKSTSDNFGKHII 474

  Fly  2043 -------------------------------------NEQKL----KRQKMN------------- 2053
                                                 :|.:|    |..|.|             
pombe   475 LTSSFSNQSADKGSSLAAEDDRNDEGSTITGVNRELQDEGRLEIDAKSSKTNTPPSPLLVGTPSK 539

  Fly  2054 -----AFQQEQLP-------EQIVCVEYPTTTKPPKVI--------------------------- 2079
                 |...::||       :.::..:.|.:..|..|:                           
pombe   540 ESLKEASSDDELPVLATKLVDNVIKEKSPLSLTPKVVVPSHKETYTDEKKLIDELDRVNPLNSSQ 604

  Fly  2080 --------------------------------------------------FSQVADAEALKKAVL 2094
                                                              .|:..:|:|.|:..:
pombe   605 LLRSKRKSAATALSMLQNVIMPDVLAFEREKKRRQTHRSVSSGEVSRESSESRNTNAKASKRVYI 669

  Fly  2095 ILGGI---------------VVDSPADATHLVMTRESRTCKLIQACCHVDY---VLKSSWIADSA 2141
            ...|.               :..:|:..|||:..|..||.|.:   |.:.|   |:...||....
pombe   670 TFTGYDKKPSIDNLKKLDMSITSNPSKCTHLIAPRILRTSKFL---CSIPYGPCVVTMDWINSCL 731

  Fly  2142 KAGKFVPTDPYRIQHIPVDENLQFNLNTVLCAPTRSTLFAGKYF-----------HVTPDVFPAR 2195
            |..:.|..:||.:.    |...:..|...|.:..:.....|...           .|.|:..|| 
pombe   732 KTHEIVDEEPYLLN----DPEKELELGCTLESALKRARAQGPSLLEDYVVYLTSKTVAPENVPA- 791

  Fly  2196 EEIIRMIESSGG-----KVEPKRRSGASVAETHMQAPDSYIIVTCPTDMHLCADLTRHG--NPKC 2253
              :|.:::|:||     .|..||.:      .|:: ..:.:::||..|.|:..:...:.  |...
pombe   792 --VISIVKSNGGVCSTLNVYNKRLA------RHLE-DGNVVLITCNEDSHIWTNFLDNASQNKTI 847

  Fly  2254 HIVSTEFVMSSILRQQLEIEPNL 2276
            .:.:.::::.::|||::::...:
pombe   848 FLQNYDWLIKTVLRQEIDVNDRI 870

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtipNP_729947.2 BRCT 9..77 CDD:214602
BRCT 96..174 CDD:278934
BRCT 1814..1887 CDD:237994 3/10 (30%)
PTCB-BRCT 1914..1976 CDD:289507 19/61 (31%)
BRCT <2087..2142 CDD:237994 16/72 (22%)
BRCT 2175..2265 CDD:278934 18/107 (17%)
brc1NP_595173.1 BRCT 18..91 CDD:214602
BRCT 105..183 CDD:278934
BRCT 218..293 CDD:278934 3/7 (43%)
PTCB-BRCT 323..381 CDD:289507 19/57 (33%)
BRCT <669..748 CDD:294035 19/85 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 47 1.000 Domainoid score I3525
eggNOG 1 0.900 - - E1_KOG2043
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004880
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23196
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R145
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.030

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